Macromolecule Annotations for the Entities in PDB 1H6K

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A27-290 d1h6ka1 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
A291-480 d1h6ka2 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
A481-790 d1h6ka3 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
B26-290 d1h6kb1 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
B291-480 d1h6kb2 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
B481-790 d1h6kb3 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
C26-290 d1h6kc1 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
C291-480 d1h6kc2 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
C481-790 d1h6kc3 All alpha proteins alpha-alpha superhelix ARM repeat MIF4G domain-like CBP80, 80KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
X d1h6kx_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD CBP20, 20KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
Y d1h6ky_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD CBP20, 20KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]
Z d1h6kz_ Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD CBP20, 20KDa nuclear cap-binding protein Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF09088 MIF4G_like MIF4G like Domain Members of this family are involved in mediating U snRNA export from the nucleus. They adopt a highly helical structure, wherein the polypeptide chain forms a right-handed solenoid. At the tertiary level, the domain is composed of a superhelical arrangement of successive antiparallel pairs of helices [1]. PFAM PF09088
A PF02854 MIF4G MIF4G domain Family
X PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. PFAM PF00076
A PF09090 MIF4G_like_2 MIF4G like Domain Members of this family are involved in mediating U snRNA export from the nucleus. They adopt a highly helical structure, wherein the polypeptide chain forms a right-handed solenoid. At the tertiary level, the domain is composed of a superhelical arrangement of successive antiparallel pairs of helices [1]. PFAM PF09090

Protein Modification Annotation

Type PDB Residue Nr. Description