Macromolecule Annotations for the Entities in PDB 1H64

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1h641_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
2 d1h642_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
A d1h64a_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
B d1h64b_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
C d1h64c_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
D d1h64d_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
E d1h64e_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
F d1h64f_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
G d1h64g_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
H d1h64h_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
I d1h64i_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
J d1h64j_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
K d1h64k_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
L d1h64l_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
M d1h64m_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
N d1h64n_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
O d1h64o_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
P d1h64p_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
Q d1h64q_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
R d1h64r_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
S d1h64s_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
T d1h64t_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
U d1h64u_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
V d1h64v_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
W d1h64w_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
X d1h64x_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
Y d1h64y_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]
Z d1h64z_ All beta proteins Sm-like fold Sm-like ribonucleoproteins Sm motif of small nuclear ribonucleoproteins, SNRNP Archaeal homoheptameric Sm protein Archaeon Pyrococcus abyssi [TaxId: 29292]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
1 PF01423 LSM LSM domain Domain The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings. PFAM PF01423

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z SNRNP SM-LIKE PROTEIN (1H64:1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description