Macromolecule Annotations for the Entities in PDB 1H0M

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A170-234 d1h0ma1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
A1-165 d1h0ma2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
B170-234 d1h0mb1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
B1-169 d1h0mb2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
C171-234 d1h0mc1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
C1-164 d1h0mc2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
D170-234 d1h0md1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
D2-169 d1h0md2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00196 GerE Bacterial regulatory proteins, luxR family Domain PFAM PF00196
A PF03472 Autoind_bind Autoinducer binding domain Domain This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules. PFAM PF03472

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D TRANSCRIPTIONAL ACTIVATOR PROTEIN TRAR (1H0M:A,B,C,D)
  • none
E,F,G,H 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)- 3' (1H0M:E,F,G,H)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description