Macromolecule Annotations for the Entities in PDB 1H0M

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A170-234 d1h0ma1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
A1-165 d1h0ma2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
B170-234 d1h0mb1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
B1-169 d1h0mb2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
C171-234 d1h0mc1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
C1-164 d1h0mc2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]
D170-234 d1h0md1 All alpha proteins DNA/RNA-binding 3-helical bundle C-terminal effector domain of the bipartite response regulators GerE-like (LuxR/UhpA family of transcriptional regulators) Quorum-sensing transcription factor TraR, C- terminal domain Agrobacterium tumefaciens [TaxId: 358]
D2-169 d1h0md2 Alpha and beta proteins (a+b) Profilin-like Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Pheromone-binding domain of LuxR-like quorum- sensing transcription factors Transcription factor TraR, N-terminal domain Agrobacterium tumefaciens [TaxId: 358]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00196 GerE Bacterial regulatory proteins, luxR family Domain PFAM PF00196
A PF03472 Autoind_bind Autoinducer binding domain Domain This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules. PFAM PF03472

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description