Macromolecule Annotations for the Entities in PDB 1GXD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-78 d1gxda1 All alpha proteins PGBD-like PGBD-like MMP N-terminal domain Gelatinase A (MMP-2) Human (Homo sapiens) [TaxId: 9606]
A429-631 d1gxda2 All beta proteins 4-bladed beta-propeller Hemopexin-like domain Hemopexin-like domain Gelatinase A (MMP-2), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
A79-187,A365-421 d1gxda3 Alpha and beta proteins (a+b) Zincin-like Metalloproteases ("zincins"), catalytic domain Matrix metalloproteases, catalytic domain Gelatinase A Human (Homo sapiens) [TaxId: 9606]
A188-248 d1gxda4 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
A249-308 d1gxda5 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
A309-364 d1gxda6 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B2-78 d1gxdb1 All alpha proteins PGBD-like PGBD-like MMP N-terminal domain Gelatinase A (MMP-2) Human (Homo sapiens) [TaxId: 9606]
B429-631 d1gxdb2 All beta proteins 4-bladed beta-propeller Hemopexin-like domain Hemopexin-like domain Gelatinase A (MMP-2), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
B79-187,B365-421 d1gxdb3 Alpha and beta proteins (a+b) Zincin-like Metalloproteases ("zincins"), catalytic domain Matrix metalloproteases, catalytic domain Gelatinase A Human (Homo sapiens) [TaxId: 9606]
B188-248 d1gxdb4 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B249-308 d1gxdb5 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B309-364 d1gxdb6 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
C d1gxdc_ All beta proteins OB-fold TIMP-like Tissue inhibitor of metalloproteinases, TIMP TIMP-2 Human (Homo sapiens) [TaxId: 9606]
D d1gxdd_ All beta proteins OB-fold TIMP-like Tissue inhibitor of metalloproteinases, TIMP TIMP-2 Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00045 Hemopexin Hemopexin Repeat
A PF00413 Peptidase_M10 Matrixin Domain The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. PFAM PF00413
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00045 Hemopexin Hemopexin Repeat
A PF01471 PG_binding_1 Putative peptidoglycan binding domain Domain This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4]. PFAM PF01471
A PF00045 Hemopexin Hemopexin Repeat
C PF00965 TIMP Tissue inhibitor of metalloproteinase Family
A PF00045 Hemopexin Hemopexin Repeat

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B 72 KDA TYPE IV COLLAGENASE (1GXD:A,B)
C,D METALLOPROTEINASE INHIBITOR 2 (1GXD:C,D)

Protein Modification Annotation

Type PDB Residue Nr. Description