Macromolecule Annotations for the Entities in PDB 1GXD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A1-78 d1gxda1 All alpha proteins PGBD-like PGBD-like MMP N-terminal domain Gelatinase A (MMP-2) Human (Homo sapiens) [TaxId: 9606]
A429-631 d1gxda2 All beta proteins 4-bladed beta-propeller Hemopexin-like domain Hemopexin-like domain Gelatinase A (MMP-2), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
A79-187,A365-421 d1gxda3 Alpha and beta proteins (a+b) Zincin-like Metalloproteases ("zincins"), catalytic domain Matrix metalloproteases, catalytic domain Gelatinase A Human (Homo sapiens) [TaxId: 9606]
A188-248 d1gxda4 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
A249-308 d1gxda5 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
A309-364 d1gxda6 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B2-78 d1gxdb1 All alpha proteins PGBD-like PGBD-like MMP N-terminal domain Gelatinase A (MMP-2) Human (Homo sapiens) [TaxId: 9606]
B429-631 d1gxdb2 All beta proteins 4-bladed beta-propeller Hemopexin-like domain Hemopexin-like domain Gelatinase A (MMP-2), C-terminal domain Human (Homo sapiens) [TaxId: 9606]
B79-187,B365-421 d1gxdb3 Alpha and beta proteins (a+b) Zincin-like Metalloproteases ("zincins"), catalytic domain Matrix metalloproteases, catalytic domain Gelatinase A Human (Homo sapiens) [TaxId: 9606]
B188-248 d1gxdb4 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B249-308 d1gxdb5 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
B309-364 d1gxdb6 Small proteins Kringle-like Kringle-like Fibronectin type II module Gelatinase A (MMP-2) type II modules Human (Homo sapiens) [TaxId: 9606]
C d1gxdc_ All beta proteins OB-fold TIMP-like Tissue inhibitor of metalloproteinases, TIMP TIMP-2 Human (Homo sapiens) [TaxId: 9606]
D d1gxdd_ All beta proteins OB-fold TIMP-like Tissue inhibitor of metalloproteinases, TIMP TIMP-2 Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01471 PG_binding_1 Putative peptidoglycan binding domain Domain This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4]. PFAM PF01471
C PF00965 TIMP Tissue inhibitor of metalloproteinase Family
A PF00045 Hemopexin Hemopexin Repeat
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00045 Hemopexin Hemopexin Repeat
A PF00045 Hemopexin Hemopexin Repeat
A PF00045 Hemopexin Hemopexin Repeat
A PF00040 fn2 Fibronectin type II domain Domain PFAM PF00040
A PF00413 Peptidase_M10 Matrixin Domain The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. PFAM PF00413

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B 72 KDA TYPE IV COLLAGENASE (1GXD:A,B)
C,D METALLOPROTEINASE INHIBITOR 2 (1GXD:C,D)

Protein Modification Annotation

Type PDB Residue Nr. Description