Macromolecule Annotations for the Entities in PDB 1GT8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A2-183 d1gt8a1 All alpha proteins Globin-like alpha-helical ferredoxin Dihydropyrimidine dehydrogenase, N-terminal domain Dihydropyrimidine dehydrogenase, N-terminal domain Pig (Sus scrofa) [TaxId: 9823]
A533-844 d1gt8a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Dihydropyrimidine dehydrogenase, domain 4 Pig (Sus scrofa) [TaxId: 9823]
A288-440 d1gt8a3 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 3 Pig (Sus scrofa) [TaxId: 9823]
A184-287,A441-532 d1gt8a4 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 2 Pig (Sus scrofa) [TaxId: 9823]
A845-1020 d1gt8a5 Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins Ferredoxin domains from multidomain proteins Dihydropyrimidine dehydrogenase, C-terminal domain Pig (Sus scrofa) [TaxId: 9823]
B2-183 d1gt8b1 All alpha proteins Globin-like alpha-helical ferredoxin Dihydropyrimidine dehydrogenase, N-terminal domain Dihydropyrimidine dehydrogenase, N-terminal domain Pig (Sus scrofa) [TaxId: 9823]
B533-844 d1gt8b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Dihydropyrimidine dehydrogenase, domain 4 Pig (Sus scrofa) [TaxId: 9823]
B288-440 d1gt8b3 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 3 Pig (Sus scrofa) [TaxId: 9823]
B184-287,B441-532 d1gt8b4 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 2 Pig (Sus scrofa) [TaxId: 9823]
B845-1020 d1gt8b5 Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins Ferredoxin domains from multidomain proteins Dihydropyrimidine dehydrogenase, C-terminal domain Pig (Sus scrofa) [TaxId: 9823]
C2-183 d1gt8c1 All alpha proteins Globin-like alpha-helical ferredoxin Dihydropyrimidine dehydrogenase, N-terminal domain Dihydropyrimidine dehydrogenase, N-terminal domain Pig (Sus scrofa) [TaxId: 9823]
C533-844 d1gt8c2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Dihydropyrimidine dehydrogenase, domain 4 Pig (Sus scrofa) [TaxId: 9823]
C288-440 d1gt8c3 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 3 Pig (Sus scrofa) [TaxId: 9823]
C184-287,C441-532 d1gt8c4 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 2 Pig (Sus scrofa) [TaxId: 9823]
C845-1020 d1gt8c5 Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins Ferredoxin domains from multidomain proteins Dihydropyrimidine dehydrogenase, C-terminal domain Pig (Sus scrofa) [TaxId: 9823]
D2-183 d1gt8d1 All alpha proteins Globin-like alpha-helical ferredoxin Dihydropyrimidine dehydrogenase, N-terminal domain Dihydropyrimidine dehydrogenase, N-terminal domain Pig (Sus scrofa) [TaxId: 9823]
D533-844 d1gt8d2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel FMN-linked oxidoreductases FMN-linked oxidoreductases Dihydropyrimidine dehydrogenase, domain 4 Pig (Sus scrofa) [TaxId: 9823]
D288-440 d1gt8d3 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain C-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 3 Pig (Sus scrofa) [TaxId: 9823]
D184-287,D441-532 d1gt8d4 Alpha and beta proteins (a/b) Nucleotide-binding domain Nucleotide-binding domain N-terminal domain of adrenodoxin reductase- like Dihydropyrimidine dehydrogenase, domain 2 Pig (Sus scrofa) [TaxId: 9823]
D845-1020 d1gt8d5 Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins Ferredoxin domains from multidomain proteins Dihydropyrimidine dehydrogenase, C-terminal domain Pig (Sus scrofa) [TaxId: 9823]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1gt8A01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
A2 1gt8A02 Mainly Alpha Orthogonal Bundle Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
A3 1gt8A03 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
A4 1gt8A04 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
A5 1gt8A05 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class I
B1 1gt8B01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
B2 1gt8B02 Mainly Alpha Orthogonal Bundle Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
B3 1gt8B03 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
B4 1gt8B04 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
B5 1gt8B05 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class I
C1 1gt8C01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
C2 1gt8C02 Mainly Alpha Orthogonal Bundle Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
C3 1gt8C03 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
C4 1gt8C04 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
C5 1gt8C05 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class I
D1 1gt8D01 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
D2 1gt8D02 Mainly Alpha Orthogonal Bundle Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2
D3 1gt8D03 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
D4 1gt8D04 Alpha Beta 3-Layer(bba) Sandwich FAD/NAD(P)-binding domain
D5 1gt8D05 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class I

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase Domain This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. PFAM PF07992
A PF14691 Fer4_20 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Domain Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This domain carries two Fe4-S4 clusters. PFAM PF14691
A PF01180 DHO_dh Dihydroorotate dehydrogenase Domain PFAM PF01180
A PF14697 Fer4_21 4Fe-4S dicluster domain Domain Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. PFAM PF14697

Protein Modification Annotation

Type PDB Residue Nr. Description