Macromolecule Annotations for the Entities in PDB 1FYT

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
D1-117 d1fytd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Human (Homo sapiens), alpha-chain [TaxId: 9606]
E3-118 d1fyte1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) T-cell antigen receptor Human (Homo sapiens), beta-chain [TaxId: 9606]
D118-203 d1fytd2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Human (Homo sapiens), alpha-chain [TaxId: 9606]
E119-246 d1fyte2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) T-cell antigen receptor Human (Homo sapiens), beta-chain [TaxId: 9606]
A82-181 d1fyta1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
B93-190 d1fytb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
A2-81 d1fyta2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
B3-92 d1fytb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
D PF09291 DUF1968 Domain of unknown function (DUF1968) Domain Members of this family are found in mammalian T-cell antigen receptor, and adopt an immunoglobulin-like beta-sandwich fold, with seven strands in two beta-sheets in a Greek-key topology. Their exact function has not, as yet, been determined. PFAM PF09291
D PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF00993 MHC_II_alpha Class II histocompatibility antigen, alpha domain Domain PFAM PF00993
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
E PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
E PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF00969 MHC_II_beta Class II histocompatibility antigen, beta domain Domain PFAM PF00969

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN (1FYT:A)
  • none
B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR- 1 BETA CHAIN (1FYT:B)
  • none
C HEMAGGLUTININ HA1 PEPTIDE CHAIN (1FYT:C)
  • none
  • none
  • none
D T-CELL RECEPTOR ALPHA CHAIN (1FYT:D)
  • none
  • none
  • none
E T-CELL RECEPTOR BETA CHAIN (1FYT:E)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description