Macromolecule Annotations for the Entities in PDB 1FW6

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A267-541 d1fw6a1 All alpha proteins DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III Thermus aquaticus [TaxId: 271]
B1267-1541 d1fw6b1 All alpha proteins DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III DNA repair protein MutS, domain III Thermus aquaticus [TaxId: 271]
A542-765 d1fw6a2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases ABC transporter ATPase domain-like DNA repair protein MutS, the C-terminal domain Thermus aquaticus [TaxId: 271]
B1542-1762 d1fw6b2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases ABC transporter ATPase domain-like DNA repair protein MutS, the C-terminal domain Thermus aquaticus [TaxId: 271]
A121-266 d1fw6a3 Alpha and beta proteins (a/b) Ribonuclease H-like motif DNA repair protein MutS, domain II DNA repair protein MutS, domain II DNA repair protein MutS, domain II Thermus aquaticus [TaxId: 271]
B1121-1266 d1fw6b3 Alpha and beta proteins (a/b) Ribonuclease H-like motif DNA repair protein MutS, domain II DNA repair protein MutS, domain II DNA repair protein MutS, domain II Thermus aquaticus [TaxId: 271]
A1-120 d1fw6a4 Alpha and beta proteins (a+b) MutS N-terminal domain-like DNA repair protein MutS, domain I DNA repair protein MutS, domain I DNA repair protein MutS, domain I Thermus aquaticus [TaxId: 271]
B1001-1120 d1fw6b4 Alpha and beta proteins (a+b) MutS N-terminal domain-like DNA repair protein MutS, domain I DNA repair protein MutS, domain I DNA repair protein MutS, domain I Thermus aquaticus [TaxId: 271]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF05192 MutS_III MutS domain III Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [4]. PFAM PF05192
A PF05188 MutS_II MutS domain II Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF01624, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. This domain corresponds to domain II in Thermus aquaticus MutS as characterised in [4], and has similarity resembles RNAse-H-like domains (see Pfam:PF00075). PFAM PF05188
A PF05190 MutS_IV MutS family domain IV Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF00488. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds in part with globular domain IV, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. PFAM PF05190
A PF00488 MutS_V MutS domain V Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF01624, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterised in [4], which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. PFAM PF00488
A PF01624 MutS_I MutS domain I Domain This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF05192 and Pfam:PF05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [2]. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterised in [4]. PFAM PF01624

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
C 5'-D(*GP*CP*GP*AP*CP*GP*CP*TP*AP*GP*CP*GP*TP*GP*CP*GP*GP*CP*TP*CP*GP*TP*C)- 3' (1FW6:C)
  • none
  • none
  • none
D 5'-D(*GP*GP*AP*CP*GP*AP*GP*CP*CP*GP*CP*CP*GP*CP*TP*AP*GP*CP*GP*TP*CP*G)- 3' (1FW6:D)
  • none
  • none
  • none
A,B DNA MISMATCH REPAIR PROTEIN MUTS (1FW6:A,B)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description