Macromolecule Annotations for the Entities in PDB 1FKA

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B d1fkab_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
C d1fkac_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
D d1fkad_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
E d1fkae_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
F d1fkaf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
G d1fkag_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
H d1fkah_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
I d1fkai_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
J d1fkaj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
K d1fkak_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
L d1fkal_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
M d1fkam_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
N d1fkan_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
O d1fkao_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
P d1fkap_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
Q d1fkaq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
R d1fkar_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
S d1fkas_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
T d1fkat_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
R PF01084 Ribosomal_S18 Ribosomal protein S18 Family
E PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
F PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
E PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
O PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
H PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
G PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
D PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
S PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S RIBOSOMAL RNA (1FKA:A)
  • none
  • none
  • none
B 30S RIBOSOMAL PROTEIN S2 (1FKA:B)
  • none
  • none
  • none
C 30S RIBOSOMAL PROTEIN S3 (1FKA:C)
  • none
  • none
  • none
D 30S RIBOSOMAL PROTEIN S4 (1FKA:D)
E 30S RIBOSOMAL PROTEIN S5 (1FKA:E)
F 30S RIBOSOMAL PROTEIN S6 (1FKA:F)
G 30S RIBOSOMAL PROTEIN S7 (1FKA:G)
H 30S RIBOSOMAL PROTEIN S8 (1FKA:H)
I 30S RIBOSOMAL PROTEIN S9 (1FKA:I)
  • none
  • none
  • none
J 30S RIBOSOMAL PROTEIN S10 (1FKA:J)
  • none
  • none
  • none
K 30S RIBOSOMAL PROTEIN S11 (1FKA:K)
  • none
  • none
  • none
L 30S RIBOSOMAL PROTEIN S12 (1FKA:L)
  • none
  • none
  • none
M 30S RIBOSOMAL PROTEIN S13 (1FKA:M)
  • none
  • none
  • none
N 30S RIBOSOMAL PROTEIN S14 (1FKA:N)
  • none
  • none
  • none
O 30S RIBOSOMAL PROTEIN S15 (1FKA:O)
P 30S RIBOSOMAL PROTEIN S16 (1FKA:P)
  • none
  • none
  • none
Q 30S RIBOSOMAL PROTEIN S17 (1FKA:Q)
  • none
  • none
  • none
R 30S RIBOSOMAL PROTEIN S18 (1FKA:R)
S 30S RIBOSOMAL PROTEIN S19 (1FKA:S)
T 30S RIBOSOMAL PROTEIN S20 (1FKA:T)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description