Macromolecule Annotations for the Entities in PDB 1FKA

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B d1fkab_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
C d1fkac_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
D d1fkad_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
E d1fkae_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
F d1fkaf_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
G d1fkag_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
H d1fkah_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
I d1fkai_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
J d1fkaj_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
K d1fkak_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
L d1fkal_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
M d1fkam_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
N d1fkan_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
O d1fkao_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
P d1fkap_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
Q d1fkaq_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
R d1fkar_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
S d1fkas_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]
T d1fkat_ Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Small subunit 30S subunit Thermus thermophilus [TaxId: 274]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
D PF01479 S4 S4 domain Domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. PFAM PF01479
S PF00203 Ribosomal_S19 Ribosomal protein S19 Domain PFAM PF00203
O PF00312 Ribosomal_S15 Ribosomal protein S15 Domain PFAM PF00312
E PF00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain Domain PFAM PF00333
R PF01084 Ribosomal_S18 Ribosomal protein S18 Family
E PF03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain Domain PFAM PF03719
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain Family
F PF01250 Ribosomal_S6 Ribosomal protein S6 Domain PFAM PF01250
H PF00410 Ribosomal_S8 Ribosomal protein S8 Domain PFAM PF00410
G PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e Domain This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. PFAM PF00177

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A 16S RIBOSOMAL RNA (1FKA:A)
  • none
  • none
  • none
B 30S RIBOSOMAL PROTEIN S2 (1FKA:B)
  • none
  • none
  • none
C 30S RIBOSOMAL PROTEIN S3 (1FKA:C)
  • none
  • none
  • none
D 30S RIBOSOMAL PROTEIN S4 (1FKA:D)
E 30S RIBOSOMAL PROTEIN S5 (1FKA:E)
F 30S RIBOSOMAL PROTEIN S6 (1FKA:F)
G 30S RIBOSOMAL PROTEIN S7 (1FKA:G)
H 30S RIBOSOMAL PROTEIN S8 (1FKA:H)
I 30S RIBOSOMAL PROTEIN S9 (1FKA:I)
  • none
  • none
  • none
J 30S RIBOSOMAL PROTEIN S10 (1FKA:J)
  • none
  • none
  • none
K 30S RIBOSOMAL PROTEIN S11 (1FKA:K)
  • none
  • none
  • none
L 30S RIBOSOMAL PROTEIN S12 (1FKA:L)
  • none
  • none
  • none
M 30S RIBOSOMAL PROTEIN S13 (1FKA:M)
  • none
  • none
  • none
N 30S RIBOSOMAL PROTEIN S14 (1FKA:N)
  • none
  • none
  • none
O 30S RIBOSOMAL PROTEIN S15 (1FKA:O)
P 30S RIBOSOMAL PROTEIN S16 (1FKA:P)
  • none
  • none
  • none
Q 30S RIBOSOMAL PROTEIN S17 (1FKA:Q)
  • none
  • none
  • none
R 30S RIBOSOMAL PROTEIN S18 (1FKA:R)
S 30S RIBOSOMAL PROTEIN S19 (1FKA:S)
T 30S RIBOSOMAL PROTEIN S20 (1FKA:T)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description