Macromolecule Annotations for the Entities in PDB 1FFK

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
S d1ffks_ All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
M d1ffkm_ All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Y d1ffky_ All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
Q d1ffkq_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
N d1ffkn_ All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
A91-237 d1ffka1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
H d1ffkh_ All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1ffka2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B d1ffkb_ All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
V d1ffkv_ Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
J d1ffkj_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
L d1ffkl_ Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
G d1ffkg_ Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
C d1ffkc_ Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
K d1ffkk_ Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
P d1ffkp_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
I d1ffki_ Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
U d1ffku_ Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
F d1ffkf_ Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
O d1ffko_ Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
T d1ffkt_ Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
D d1ffkd_ Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E d1ffke_ Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
11-79 d1ffk11 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
180-172 d1ffk12 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
R d1ffkr_ Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
W d1ffkw_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
X d1ffkx_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
Z d1ffkz_ Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
F PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e Family
V PF01655 Ribosomal_L32e Ribosomal protein L32 Family
G PF00572 Ribosomal_L13 Ribosomal protein L13 Family
U PF01198 Ribosomal_L31e Ribosomal protein L31e Family
T PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e Domain This family includes prokaryotic L30 and eukaryotic L7. PFAM PF00327
W PF01780 Ribosomal_L37ae Ribosomal L37ae protein family Family
M PF01280 Ribosomal_L19e Ribosomal protein L19e Family
S PF00831 Ribosomal_L29 Ribosomal L29 protein Family
Q PF00467 KOW KOW motif Family
1 PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
C PF00573 Ribosomal_L4 Ribosomal protein L4/L1 family Family
E PF01248 Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Domain This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1]. PFAM PF01248
A PF03947 Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain Domain PFAM PF03947
N PF01157 Ribosomal_L21e Ribosomal protein L21e Family
X PF01907 Ribosomal_L37e Ribosomal protein L37e Family
R PF01246 Ribosomal_L24e Ribosomal protein L24e Family
B PF00297 Ribosomal_L3 Ribosomal protein L3 Family
K PF00861 Ribosomal_L18p Ribosomal L18p/L5e family Family
Z PF00935 Ribosomal_L44 Ribosomal protein L44 Family
H PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e Domain PFAM PF00238
D PF00281 Ribosomal_L5 Ribosomal protein L5 Domain PFAM PF00281
O PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e Domain This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. PFAM PF00237
1 PF00347 Ribosomal_L6 Ribosomal protein L6 Domain PFAM PF00347
L PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family
Y PF00832 Ribosomal_L39 Ribosomal L39 protein Family
P PF00276 Ribosomal_L23 Ribosomal protein L23 Family
D PF00673 Ribosomal_L5_C ribosomal L5P family C-terminus Domain This region is found associated with Pfam:PF00281. PFAM PF00673
A PF00181 Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain Domain PFAM PF00181
I PF00827 Ribosomal_L15e Ribosomal L15 Family
J PF00828 Ribosomal_L18e Ribosomal protein L18e/L15 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S RRNA (1FFK:0)
  • none
  • none
  • none
9 5S RRNA (1FFK:9)
  • none
  • none
  • none
A RIBOSOMAL PROTEIN L2 (1FFK:A)
B RIBOSOMAL PROTEIN L3 (1FFK:B)
C RIBOSOMAL PROTEIN L4 (1FFK:C)
D RIBOSOMAL PROTEIN L5 (1FFK:D)
E RIBOSOMAL PROTEIN L7AE (1FFK:E)
F RIBOSOMAL PROTEIN L10E (1FFK:F)
G RIBOSOMAL PROTEIN L13 (1FFK:G)
H RIBOSOMAL PROTEIN L14 (1FFK:H)
I RIBOSOMAL PROTEIN L15E (1FFK:I)
J RIBOSOMAL PROTEIN L15 (1FFK:J)
K RIBOSOMAL PROTEIN L18 (1FFK:K)
L RIBOSOMAL PROTEIN L18E (1FFK:L)
M RIBOSOMAL PROTEIN L19 (1FFK:M)
N RIBOSOMAL PROTEIN L21E (1FFK:N)
O RIBOSOMAL PROTEIN L22 (1FFK:O)
P RIBOSOMAL PROTEIN L23 (1FFK:P)
Q RIBOSOMAL PROTEIN L24 (1FFK:Q)
R RIBOSOMAL PROTEIN L24E (1FFK:R)
S RIBOSOMAL PROTEIN L29 (1FFK:S)
T RIBOSOMAL PROTEIN L30 (1FFK:T)
U RIBOSOMAL PROTEIN L31E (1FFK:U)
V RIBOSOMAL PROTEIN L32E (1FFK:V)
W RIBOSOMAL PROTEIN L37AE (1FFK:W)
X RIBOSOMAL PROTEIN L37E (1FFK:X)
Y RIBOSOMAL PROTEIN L39E (1FFK:Y)
Z RIBOSOMAL PROTEIN L44E (1FFK:Z)
1 RIBOSOMAL PROTEIN L6 (1FFK:1)