Macromolecule Annotations for the Entities in PDB 1F2I

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
G1093-1131 d1f2ig1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
G1132-1158 d1f2ig2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
H2093-2131 d1f2ih1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
H2132-2158 d1f2ih2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
I3093-3131 d1f2ii1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
I3132-3158 d1f2ii2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
J4093-4131 d1f2ij1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
J4132-4158 d1f2ij2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
K5096-5131 d1f2ik1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
K5132-5158 d1f2ik2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
L6093-6131 d1f2il1 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]
L6132-6158 d1f2il2 Small proteins beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers Classic zinc finger, C2H2 ZIF268 Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
G PF00096 zf-C2H2 Zinc finger, C2H2 type Domain The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [2]. PFAM PF00096
G PF13894 zf-C2H2_4 C2H2-type zinc finger Domain This family contains a number of divergent C2H2 type zinc fingers. PFAM PF13894

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D,E,F 5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)- 3' (1F2I:A,B,C,D,E,F)
  • none
  • none
  • none
G,H,I,J,K,L FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 (1F2I:G,H,I,J,K,L)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description