Macromolecule Annotations for the Entities in PDB 1EKM

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A237-672 d1ekma1 All beta proteins Supersandwich Amine oxidase catalytic domain Amine oxidase catalytic domain Copper amine oxidase, domain 3 Yeast (Hansenula polymorpha) [TaxId: 4905]
B237-672 d1ekmb1 All beta proteins Supersandwich Amine oxidase catalytic domain Amine oxidase catalytic domain Copper amine oxidase, domain 3 Yeast (Hansenula polymorpha) [TaxId: 4905]
C237-672 d1ekmc1 All beta proteins Supersandwich Amine oxidase catalytic domain Amine oxidase catalytic domain Copper amine oxidase, domain 3 Yeast (Hansenula polymorpha) [TaxId: 4905]
A17-115 d1ekma2 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]
A116-236 d1ekma3 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]
B17-115 d1ekmb2 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]
B116-236 d1ekmb3 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]
C17-115 d1ekmc2 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]
C116-236 d1ekmc3 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Yeast (Hansenula polymorpha) [TaxId: 4905]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02728 Cu_amine_oxidN3 Copper amine oxidase, N3 domain Domain This domain is the second or third structural domain in copper amine oxidases, it is known as the N3 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). PFAM PF02728
A PF02727 Cu_amine_oxidN2 Copper amine oxidase, N2 domain Domain This domain is the first or second structural domain in copper amine oxidases, it is known as the N2 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). PFAM PF02727
A PF01179 Cu_amine_oxid Copper amine oxidase, enzyme domain Domain Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). This family corresponds to the catalytic domain of the enzyme. PFAM PF01179

Protein Modification Annotation

Type PDB Residue Nr. Description