Macromolecule Annotations for the Entities in PDB 1E79

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H101-145 d1e79h1 All alpha proteins Long alpha-hairpin Epsilon subunit of F1F0-ATP synthase C-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain Cow (Bos taurus) [TaxId: 9913]
A380-510 d1e79a1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
B380-510 d1e79b1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
C380-510 d1e79c1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
D358-475 d1e79d1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
E358-474 d1e79e1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
F358-474 d1e79f1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
I d1e79i_ All alpha proteins Non-globular all-alpha subunits of globular proteins Epsilon subunit of mitochondrial F1F0-ATP synthase Epsilon subunit of mitochondrial F1F0-ATP synthase Epsilon subunit of mitochondrial F1F0-ATP synthase Cow (Bos taurus) [TaxId: 9913]
A19-94 d1e79a2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
B19-94 d1e79b2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
C19-94 d1e79c2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
D9-81 d1e79d2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
E9-81 d1e79e2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
F9-81 d1e79f2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
H15-100 d1e79h2 All beta proteins Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase N-terminal domain Cow (Bos taurus) [TaxId: 9913]
A95-379 d1e79a3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
B95-379 d1e79b3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
C95-379 d1e79c3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
D82-357 d1e79d3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
E82-357 d1e79e3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
F82-357 d1e79f3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
G d1e79g_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1e79A01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
A2 1e79A02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
A3 1e79A03 Mainly Alpha Up-down Bundle Lysin
B1 1e79B01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
B2 1e79B02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
B3 1e79B03 Mainly Alpha Up-down Bundle Lysin
C1 1e79C01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
C2 1e79C02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
C3 1e79C03 Mainly Alpha Up-down Bundle Lysin
D1 1e79D01 Mainly Beta Beta Barrel Thrombin, subunit H
D2 1e79D02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
D3 1e79D03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
E1 1e79E01 Mainly Beta Beta Barrel Thrombin, subunit H
E2 1e79E02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
E3 1e79E03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
F1 1e79F01 Mainly Beta Beta Barrel Thrombin, subunit H
F2 1e79F02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
F3 1e79F03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
G1 1e79G01 Mainly Alpha Orthogonal Bundle Helix Hairpins
G2 1e79G02 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase; Chain: A, domain 1
H1 1e79H01 Mainly Beta Sandwich ATP Synthase; domain 1 ATP Synthase; domain 1
H2 1e79H02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces
I 1e79I00 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I;

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
H PF02823 ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain Domain Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213). PFAM PF02823
I PF04627 ATP-synt_Eps Mitochondrial ATP synthase epsilon chain Family
D PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
A PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
A PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
D PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
D PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
A PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
G PF00231 ATP-synt ATP synthase Domain PFAM PF00231

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C ATP SYNTHASE ALPHA CHAIN HEART ISOFORM (1E79:A,B,C)
D,E,F ATP SYNTHASE BETA CHAIN (1E79:D,E,F)
G ATP SYNTHASE GAMMA CHAIN (1E79:G)
H ATP SYNTHASE DELTA CHAIN (1E79:H)
I ATP SYNTHASE EPSILON CHAIN (1E79:I)

Protein Modification Annotation

Type PDB Residue Nr. Description