Macromolecule Annotations for the Entities in PDB 1DYU

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A301-724 d1dyua1 All beta proteins Supersandwich Amine oxidase catalytic domain Amine oxidase catalytic domain Copper amine oxidase, domain 3 Escherichia coli [TaxId: 562]
B301-725 d1dyub1 All beta proteins Supersandwich Amine oxidase catalytic domain Amine oxidase catalytic domain Copper amine oxidase, domain 3 Escherichia coli [TaxId: 562]
A91-185 d1dyua2 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Escherichia coli [TaxId: 562]
A186-300 d1dyua3 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Escherichia coli [TaxId: 562]
B91-185 d1dyub2 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Escherichia coli [TaxId: 562]
B186-300 d1dyub3 Alpha and beta proteins (a+b) Cystatin-like Amine oxidase N-terminal region Amine oxidase N-terminal region Copper amine oxidase, domains 1 and 2 Escherichia coli [TaxId: 562]
A7-90 d1dyua4 Alpha and beta proteins (a+b) N domain of copper amine oxidase-like Copper amine oxidase, domain N Copper amine oxidase, domain N Copper amine oxidase, domain N Escherichia coli [TaxId: 562]
B6-90 d1dyub4 Alpha and beta proteins (a+b) N domain of copper amine oxidase-like Copper amine oxidase, domain N Copper amine oxidase, domain N Copper amine oxidase, domain N Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02727 Cu_amine_oxidN2 Copper amine oxidase, N2 domain Domain This domain is the first or second structural domain in copper amine oxidases, it is known as the N2 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). PFAM PF02727
A PF01179 Cu_amine_oxid Copper amine oxidase, enzyme domain Domain Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). This family corresponds to the catalytic domain of the enzyme. PFAM PF01179
A PF07833 Cu_amine_oxidN1 Copper amine oxidase N-terminal domain Domain Copper amine oxidases catalyse the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [1,2]. PFAM PF07833
A PF02728 Cu_amine_oxidN3 Copper amine oxidase, N3 domain Domain This domain is the second or third structural domain in copper amine oxidases, it is known as the N3 domain. Its function is uncertain. The catalytic domain can be found in Pfam:PF01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyse the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). PFAM PF02728

Protein Modification Annotation

Type PDB Residue Nr. Description