Macromolecule Annotations for the Entities in PDB 1DV6

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
H36-256 d1dv6h1 All beta proteins PRC-barrel domain PRC-barrel domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre Rhodobacter sphaeroides [TaxId: 1063]
T36-256 d1dv6t1 All beta proteins PRC-barrel domain PRC-barrel domain Photosynthetic reaction centre, H-chain, cytoplasmic domain Photosynthetic reaction centre Rhodobacter sphaeroides [TaxId: 1063]
L d1dv6l_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits L (light) subunit Rhodobacter sphaeroides [TaxId: 1063]
M d1dv6m_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits M (medium) subunit Rhodobacter sphaeroides [TaxId: 1063]
H11-35 d1dv6h2 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Rhodobacter sphaeroides [TaxId: 1063]
R d1dv6r_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits L (light) subunit Rhodobacter sphaeroides [TaxId: 1063]
S d1dv6s_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits M (medium) subunit Rhodobacter sphaeroides [TaxId: 1063]
T11-35 d1dv6t2 Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Photosystem II reaction centre subunit H, transmembrane region Rhodobacter sphaeroides [TaxId: 1063]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
H1 1dv6H01 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic Reaction Center, subunit H, domain 1
H2 1dv6H02 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2
L1 1dv6L01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
L2 1dv6L02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
M1 1dv6M01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
M2 1dv6M02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
R1 1dv6R01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
R2 1dv6R02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
S1 1dv6S01 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
S2 1dv6S02 Mainly Alpha Up-down Bundle Photosynthetic Reaction Center, subunit M; domain 1 Membrane spanning alpha-helix pairs
T1 1dv6T01 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic Reaction Center, subunit H, domain 1
T2 1dv6T02 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
H PF05239 PRC PRC-barrel domain Domain The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1]. PFAM PF05239
M PF00124 Photo_RC Photosynthetic reaction centre protein Family
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region Family
L PF00124 Photo_RC Photosynthetic reaction centre protein Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
L,R PHOTOSYNTHETIC REACTION CENTER (1DV6:L,R)
M,S PHOTOSYNTHETIC REACTION CENTER (1DV6:M,S)
H,T PHOTOSYNTHETIC REACTION CENTER (1DV6:H,T)

Protein Modification Annotation

Type PDB Residue Nr. Description