Macromolecule Annotations for the Entities in PDB 1DM0

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B d1dm0b_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
C d1dm0c_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
D d1dm0d_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
E d1dm0e_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
F d1dm0f_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
G d1dm0g_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
H d1dm0h_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
I d1dm0i_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
J d1dm0j_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
K d1dm0k_ All beta proteins OB-fold Bacterial enterotoxins Bacterial AB5 toxins, B-subunits Verotoxin-1/shiga-toxin, B-pentamer Shigella dysenteriae, toxin I [TaxId: 622]
A d1dm0a_ Alpha and beta proteins (a+b) Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) Shiga toxin, A-chain Shiga toxin, A-chain Shigella dysenteriae, toxin I [TaxId: 622]
L d1dm0l_ Alpha and beta proteins (a+b) Ribosome inactivating proteins (RIP) Ribosome inactivating proteins (RIP) Shiga toxin, A-chain Shiga toxin, A-chain Shigella dysenteriae, toxin I [TaxId: 622]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF02258 SLT_beta Shiga-like toxin beta subunit Domain This family represents the B subunit of shiga-like toxin (SLT or verotoxin) produced by some strains of E.coli associated with hemorrhagic colitis and hemolytic uremic syndrome. SLT's are composed of one enzymatic A subunit and five cell binding B subunits. PFAM PF02258
A PF00161 RIP Ribosome inactivating protein Domain PFAM PF00161

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,L SHIGA TOXIN A SUBUNIT (1DM0:A,L)
  • none
B,C,D,E,F,G,H,I,J,K SHIGA TOXIN B SUBUNIT (1DM0:B,C,D,E,F,G,H,I,J,K)

Protein Modification Annotation

Type PDB Residue Nr. Description