Macromolecule Annotations for the Entities in PDB 1DII

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain Domain This domain has a ferredoxin-like fold. PFAM PF02913
C PF13442 Cytochrome_CBB3 Cytochrome C oxidase, cbb3-type, subunit III Domain PFAM PF13442
A PF01565 FAD_binding_4 FAD binding domain Domain This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 [1]. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyses the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC: This enzyme is involved in the biosynthesis of peptidoglycan [2]. PFAM PF01565

Protein Modification Annotation

Type PDB Residue Nr. Description