Macromolecule Annotations for the Entities in PDB 1DEE

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
G d1deeg_ All alpha proteins immunoglobulin/albumin-binding domain-like Bacterial immunoglobulin/albumin-binding domains Immunoglobulin-binding protein A modules Immunoglobulin-binding protein A modules Staphylococcus aureus [TaxId: 1280]
H d1deeh_ All alpha proteins immunoglobulin/albumin-binding domain-like Bacterial immunoglobulin/albumin-binding domains Immunoglobulin-binding protein A modules Immunoglobulin-binding protein A modules Staphylococcus aureus [TaxId: 1280]
A1-107 d1deea1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 1 [TaxId: 9606]
B501-621 d1deeb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 3 [TaxId: 9606]
C1001-1107 d1deec1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 1 [TaxId: 9606]
D1501-1621 d1deed1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 3 [TaxId: 9606]
E2001-2107 d1deee1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Human (Homo sapiens), cluster 1 [TaxId: 9606]
F2501-2621 d1deef1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Human (Homo sapiens), cluster 3 [TaxId: 9606]
A108-214 d1deea2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
B622-723 d1deeb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain mu constant domain 1, CH1- mu Human (Homo sapiens) [TaxId: 9606]
C1108-1214 d1deec2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
D1622-1723 d1deed2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain mu constant domain 1, CH1- mu Human (Homo sapiens) [TaxId: 9606]
E2108-2214 d1deee2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
F2622-2723 d1deef2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain mu constant domain 1, CH1- mu Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
G PF02216 B B domain Domain This family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. PFAM PF02216
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
B PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,C,E IGM RF 2A2 (1DEE:A,C,E)
  • none
  • none
  • none
B,D,F IGM RF 2A2 (1DEE:B,D,F)
  • none
  • none
  • none
G,H IMMUNOGLOBULIN G BINDING PROTEIN A (1DEE:G,H)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description