Macromolecule Annotations for the Entities in PDB 1DED

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A497-582 d1deda1 All beta proteins Immunoglobulin-like beta-sandwich E set domains E-set domains of sugar-utilizing enzymes Cyclomaltodextrin glycanotransferase, domain D Bacillus sp., strain 1011 [TaxId: 1409]
B497-582 d1dedb1 All beta proteins Immunoglobulin-like beta-sandwich E set domains E-set domains of sugar-utilizing enzymes Cyclomaltodextrin glycanotransferase, domain D Bacillus sp., strain 1011 [TaxId: 1409]
A583-686 d1deda2 All beta proteins Prealbumin-like Starch-binding domain-like Starch-binding domain Cyclodextrin glycosyltransferase, C-terminal domain Bacillus sp., strain 1011 [TaxId: 1409]
B583-686 d1dedb2 All beta proteins Prealbumin-like Starch-binding domain-like Starch-binding domain Cyclodextrin glycosyltransferase, C-terminal domain Bacillus sp., strain 1011 [TaxId: 1409]
A407-496 d1deda3 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain alpha-Amylases, C-terminal beta-sheet domain Cyclodextrin glycosyltransferase Bacillus sp., strain 1011 [TaxId: 1409]
B407-496 d1dedb3 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain alpha-Amylases, C-terminal beta-sheet domain Cyclodextrin glycosyltransferase Bacillus sp., strain 1011 [TaxId: 1409]
A1-406 d1deda4 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Cyclodextrin glycosyltransferase Bacillus sp. 1011, alkaliphilic [TaxId: 1410]
B1-406 d1dedb4 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Cyclodextrin glycosyltransferase Bacillus sp. 1011, alkaliphilic [TaxId: 1410]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00686 CBM_20 Starch binding domain Family
A PF02806 Alpha-amylase_C Alpha amylase, C-terminal all-beta domain Domain Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. PFAM PF02806
A PF00128 Alpha-amylase Alpha amylase, catalytic domain Domain Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. PFAM PF00128
A PF01833 TIG IPT/TIG domain Domain This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members. PFAM PF01833

Protein Modification Annotation

Type PDB Residue Nr. Description