Macromolecule Annotations for the Entities in PDB 1DE4

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
C609-756 d1de4c1 All alpha proteins N-cbl like Transferrin receptor-like dimerisation domain Transferrin receptor-like dimerisation domain Transferrin receptor ectodomain, C-terminal domain Human (Homo sapiens) [TaxId: 9606]
F609-756 d1de4f1 All alpha proteins N-cbl like Transferrin receptor-like dimerisation domain Transferrin receptor-like dimerisation domain Transferrin receptor ectodomain, C-terminal domain Human (Homo sapiens) [TaxId: 9606]
I609-756 d1de4i1 All alpha proteins N-cbl like Transferrin receptor-like dimerisation domain Transferrin receptor-like dimerisation domain Transferrin receptor ectodomain, C-terminal domain Human (Homo sapiens) [TaxId: 9606]
A182-275 d1de4a1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Hemochromatosis protein Hfe, alpha-3 domain Human (Homo sapiens) [TaxId: 9606]
B d1de4b_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Human (Homo sapiens) [TaxId: 9606]
D182-275 d1de4d1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Hemochromatosis protein Hfe, alpha-3 domain Human (Homo sapiens) [TaxId: 9606]
E d1de4e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Human (Homo sapiens) [TaxId: 9606]
G182-275 d1de4g1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Hemochromatosis protein Hfe, alpha-3 domain Human (Homo sapiens) [TaxId: 9606]
H d1de4h_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) beta2-microglobulin Human (Homo sapiens) [TaxId: 9606]
C190-382 d1de4c2 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain PA domain PA domain Transferrin receptor ectodomain, apical domain Human (Homo sapiens) [TaxId: 9606]
F190-382 d1de4f2 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain PA domain PA domain Transferrin receptor ectodomain, apical domain Human (Homo sapiens) [TaxId: 9606]
I190-382 d1de4i2 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain PA domain PA domain Transferrin receptor ectodomain, apical domain Human (Homo sapiens) [TaxId: 9606]
C122-189,C383-608 d1de4c3 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases FolH catalytic domain-like Transferrin receptor ectodomain, protease- like domain Human (Homo sapiens) [TaxId: 9606]
F122-189,F383-608 d1de4f3 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases FolH catalytic domain-like Transferrin receptor ectodomain, protease- like domain Human (Homo sapiens) [TaxId: 9606]
I122-189,I383-608 d1de4i3 Alpha and beta proteins (a/b) Phosphorylase/hydrolase-like Zn-dependent exopeptidases FolH catalytic domain-like Transferrin receptor ectodomain, protease- like domain Human (Homo sapiens) [TaxId: 9606]
A4-181 d1de4a2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Hemochromatosis protein Hfe, alpha-1 and alpha- 2 domains Human (Homo sapiens) [TaxId: 9606]
D4-181 d1de4d2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Hemochromatosis protein Hfe, alpha-1 and alpha- 2 domains Human (Homo sapiens) [TaxId: 9606]
G4-181 d1de4g2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Hemochromatosis protein Hfe, alpha-1 and alpha- 2 domains Human (Homo sapiens) [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1de4A01 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2- DB; Chain A, domain 1 Murine Class I Major Histocompatibility Complex, H2- DB, subunit A, domain 1
A2 1de4A02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
B 1de4B00 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
C1 1de4C01 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidases
C2 1de4C02 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1
C3 1de4C03 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A
D1 1de4D01 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2- DB; Chain A, domain 1 Murine Class I Major Histocompatibility Complex, H2- DB, subunit A, domain 1
D2 1de4D02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E 1de4E00 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
F1 1de4F01 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidases
F2 1de4F02 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1
F3 1de4F03 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A
G1 1de4G01 Alpha Beta 2-Layer Sandwich Murine Class I Major Histocompatibility Complex, H2- DB; Chain A, domain 1 Murine Class I Major Histocompatibility Complex, H2- DB, subunit A, domain 1
G2 1de4G02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H 1de4H00 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
I1 1de4I01 Alpha Beta 3-Layer(aba) Sandwich Aminopeptidase Zn peptidases
I2 1de4I02 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1
I3 1de4I03 Mainly Alpha Up-down Bundle Transcription Elongation Factor S-II; Chain A

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
C PF04253 TFR_dimer Transferrin receptor-like dimerisation domain Domain This domain is involved in dimerisation of the transferrin receptor as shown in its crystal structure. PFAM PF04253
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF00129 MHC_I Class I Histocompatibility antigen, domains alpha 1 and 2 Domain PFAM PF00129
C PF02225 PA PA domain Family
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
C PF04389 Peptidase_M28 Peptidase family M28 Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G HEMOCHROMATOSIS PROTEIN (1DE4:A,D,G)
B,E,H BETA-2-MICROGLOBULIN (1DE4:B,E,H)
C,F,I TRANSFERRIN RECEPTOR (1DE4:C,F,I)

Protein Modification Annotation

Type PDB Residue Nr. Description