Macromolecule Annotations for the Entities in PDB 1DDX

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A74-583 d1ddxa1 All alpha proteins Heme-dependent peroxidases Heme-dependent peroxidases Myeloperoxidase-like Prostaglandin H2 synthase Mouse (Mus musculus) [TaxId: 10090]
B1074-1583 d1ddxb1 All alpha proteins Heme-dependent peroxidases Heme-dependent peroxidases Myeloperoxidase-like Prostaglandin H2 synthase Mouse (Mus musculus) [TaxId: 10090]
C2074-2583 d1ddxc1 All alpha proteins Heme-dependent peroxidases Heme-dependent peroxidases Myeloperoxidase-like Prostaglandin H2 synthase Mouse (Mus musculus) [TaxId: 10090]
D3074-3583 d1ddxd1 All alpha proteins Heme-dependent peroxidases Heme-dependent peroxidases Myeloperoxidase-like Prostaglandin H2 synthase Mouse (Mus musculus) [TaxId: 10090]
A33-73 d1ddxa2 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Prostaglandin H2 synthase-1, EGF-like module Mouse (Mus musculus) [TaxId: 10090]
B1033-1073 d1ddxb2 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Prostaglandin H2 synthase-1, EGF-like module Mouse (Mus musculus) [TaxId: 10090]
C2033-2073 d1ddxc2 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Prostaglandin H2 synthase-1, EGF-like module Mouse (Mus musculus) [TaxId: 10090]
D3033-3073 d1ddxd2 Small proteins Knottins (small inhibitors, toxins, lectins) EGF/Laminin EGF-type module Prostaglandin H2 synthase-1, EGF-like module Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF03098 An_peroxidase Animal haem peroxidase Family
A PF00008 EGF EGF-like domain Domain There is no clear separation between noise and signal. Pfam:PF00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. PFAM PF00008

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D PROTEIN (PROSTAGLANDIN H2 SYNTHASE-2) (1DDX:A,B,C,D)
SUGAR (NAG-NAG) (1DDX:)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description