Macromolecule Annotations for the Entities in PDB 1DCE

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
B d1dceb_ All alpha proteins alpha/alpha toroid Terpenoid cyclases/Protein prenyltransferases Protein prenyltransferases Rab geranylgeranyltransferase, beta subunit Rat (Rattus norvegicus) [TaxId: 10116]
D d1dced_ All alpha proteins alpha/alpha toroid Terpenoid cyclases/Protein prenyltransferases Protein prenyltransferases Rab geranylgeranyltransferase, beta subunit Rat (Rattus norvegicus) [TaxId: 10116]
A1-241,A351-443 d1dcea1 All alpha proteins alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Rab geranylgeranyltransferase alpha-subunit, N- terminal domain Rat (Rattus norvegicus) [TaxId: 10116]
C1-241,C351-443 d1dcec1 All alpha proteins alpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase Rab geranylgeranyltransferase alpha-subunit, N- terminal domain Rat (Rattus norvegicus) [TaxId: 10116]
A242-350 d1dcea2 All beta proteins C2 domain-like Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rat (Rattus norvegicus) [TaxId: 10116]
C242-350 d1dcec2 All beta proteins C2 domain-like Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rab geranylgeranyltransferase alpha-subunit, insert domain Rat (Rattus norvegicus) [TaxId: 10116]
A444-567 d1dcea3 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) L domain-like Rab geranylgeranyltransferase alpha-subunit, C- terminal domain Rab geranylgeranyltransferase alpha-subunit, C- terminal domain Rat (Rattus norvegicus) [TaxId: 10116]
C444-567 d1dcec3 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) L domain-like Rab geranylgeranyltransferase alpha-subunit, C- terminal domain Rab geranylgeranyltransferase alpha-subunit, C- terminal domain Rat (Rattus norvegicus) [TaxId: 10116]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat Repeat
B PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat Repeat
A PF01239 PPTA Protein prenyltransferase alpha subunit repeat Repeat
A PF01239 PPTA Protein prenyltransferase alpha subunit repeat Repeat
A PF01239 PPTA Protein prenyltransferase alpha subunit repeat Repeat
B PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat Repeat
A PF01239 PPTA Protein prenyltransferase alpha subunit repeat Repeat
B PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat Repeat
A PF07711 RabGGT_insert Rab geranylgeranyl transferase alpha-subunit, insert domain Domain Rab geranylgeranyl transferase (RabGGT) catalyses the addition of two geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, which is crucial for membrane association and function of these proteins in intracellular vesicular trafficking [1]. This domain is inserted between Pfam:PF01239 repeats. This domain adopts an Ig-like fold and is thought to be involved in protein-protein interactions and might be involved in the recognition and binding of REP [1]. PFAM PF07711
B PF00432 Prenyltrans Prenyltransferase and squalene oxidase repeat Repeat

Protein Modification Annotation

Type PDB Residue Nr. Description