Macromolecule Annotations for the Entities in PDB 1D5Y

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A3-56 d1d5ya1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
A57-121 d1d5ya2 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
B3-56 d1d5yb1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
B57-121 d1d5yb2 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
C3-56 d1d5yc1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
C57-121 d1d5yc2 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
D3-56 d1d5yd1 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
D57-121 d1d5yd2 All alpha proteins DNA/RNA-binding 3-helical bundle Homeodomain-like AraC type transcriptional activator Rob transcription factor, N-terminal domain Escherichia coli [TaxId: 562]
A122-294 d1d5ya3 Alpha and beta proteins (a+b) Probable bacterial effector-binding domain Probable bacterial effector-binding domain Rob transcription factor, C-terminal domain Rob transcription factor, C-terminal domain Escherichia coli [TaxId: 562]
B122-294 d1d5yb3 Alpha and beta proteins (a+b) Probable bacterial effector-binding domain Probable bacterial effector-binding domain Rob transcription factor, C-terminal domain Rob transcription factor, C-terminal domain Escherichia coli [TaxId: 562]
C122-294 d1d5yc3 Alpha and beta proteins (a+b) Probable bacterial effector-binding domain Probable bacterial effector-binding domain Rob transcription factor, C-terminal domain Rob transcription factor, C-terminal domain Escherichia coli [TaxId: 562]
D122-294 d1d5yd3 Alpha and beta proteins (a+b) Probable bacterial effector-binding domain Probable bacterial effector-binding domain Rob transcription factor, C-terminal domain Rob transcription factor, C-terminal domain Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF12833 HTH_18 Helix-turn-helix domain Domain PFAM PF12833
A PF06445 GyrI-like GyrI-like small molecule binding domain Domain This family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding [3]. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira [3]. PFAM PF06445

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
M,O DNA (5'-D(*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*GP*AP*AP*TP*GP*TP*CP*AP*AP*AP*G)- 3') (1D5Y:M,O)
  • none
  • none
  • none
N,P DNA (5'-D(*AP*CP*TP*TP*TP*GP*AP*CP*AP*TP*TP*CP*AP*GP*TP*GP*CP*TP*GP*TP*C)- 3') (1D5Y:N,P)
  • none
  • none
  • none
A,B,C,D ROB TRANSCRIPTION FACTOR (1D5Y:A,B,C,D)

Protein Modification Annotation

Type PDB Residue Nr. Description