1D3E

CRYO-EM STRUCTURE OF HUMAN RHINOVIRUS 16 (HRV16) COMPLEXED WITH A TWO-DOMAIN FRAGMENT OF ITS CELLULAR RECEPTOR, INTERCELLULAR ADHESION MOLECULE-1 (D1D2-ICAM-1). IMPLICATIONS FOR VIRUS-RECEPTOR INTERACTIONS. ALPHA CARBONS ONLY


Macromolecule Annotations for the Entities in PDB 1D3E

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
I PF03921 ICAM_N Intercellular adhesion molecule (ICAM), N-terminal domain Family
4 PF02226 Pico_P1A Picornavirus coat protein (VP4) Family
3 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
2 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073
1 PF00073 Rhv picornavirus capsid protein Domain CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur. PFAM PF00073

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
I PROTEIN (INTERCELLULAR ADHESION MOLECULE- 1) (1D3E:I)
  • none
1 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP1) (1D3E:1)
  • none
2 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP2) (1D3E:2)
  • none
3 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) (1D3E:3)
  • none
4 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP4) (1D3E:4)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description