Macromolecule Annotations for the Entities in PDB 1CZ8

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
L1-107 d1cz8l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
H1-123 d1cz8h1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 4 [TaxId: 10090]
X1-107 d1cz8x1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Y1-123 d1cz8y1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 4 [TaxId: 10090]
L108-213 d1cz8l2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
H124-224 d1cz8h2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
X108-213 d1cz8x2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
Y124-224 d1cz8y2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
V d1cz8v_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF Human (Homo sapiens) [TaxId: 9606]
W d1cz8w_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
V PF00341 PDGF PDGF/VEGF domain Domain PFAM PF00341
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
V,W Vascular endothelial growth factor A (1CZ8:V,W)
  • none
L,X LIGHT CHAIN OF NEUTRALIZING ANTIBODY (1CZ8:L,X)
  • none
  • none
  • none
H,Y HEAVY CHAIN OF NEUTRALIZING ANTIBODY (1CZ8:H,Y)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description