Macromolecule Annotations for the Entities in PDB 1CVJ

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A11-90 d1cvja1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
A91-179 d1cvja2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
B11-90 d1cvjb1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
B91-175 d1cvjb2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
C11-90 d1cvjc1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
C91-178 d1cvjc2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
D11-90 d1cvjd1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
D91-175 d1cvjd2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
E11-90 d1cvje1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
E91-178 d1cvje2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
F11-90 d1cvjf1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
F91-173 d1cvjf2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
G11-90 d1cvjg1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
G91-175 d1cvjg2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
H11-90 d1cvjh1 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]
H91-175 d1cvjh2 Alpha and beta proteins (a+b) Ferredoxin-like RNA-binding domain, RBD Canonical RBD Poly(A)-binding protein Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. PFAM PF00076
A PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Domain The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease. PFAM PF00076

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
M,N,O,P,Q,R,S,T 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' (1CVJ:M,N,O,P,Q,R,S,T)
  • none
  • none
  • none
A,B,C,D,E,F,G,H POLYADENYLATE BINDING PROTEIN 1 (1CVJ:A,B,C,D,E,F,G,H)
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description