Macromolecule Annotations for the Entities in PDB 1CS0

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A403-555 d1cs0a1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
C403-555 d1cs0c1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
E403-555 d1cs0e1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
G403-555 d1cs0g1 All alpha proteins Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Carbamoyl phosphate synthetase, large subunit connection domain Escherichia coli [TaxId: 562]
B2-152 d1cs0b1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
D2-152 d1cs0d1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
F2-152 d1cs0f1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
H2-152 d1cs0h1 Alpha and beta proteins (a/b) The "swivelling" beta/beta/alpha domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Carbamoyl phosphate synthetase, small subunit N- terminal domain Escherichia coli [TaxId: 562]
B153-380 d1cs0b2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
D153-380 d1cs0d2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
F153-380 d1cs0f2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
H153-380 d1cs0h2 Alpha and beta proteins (a/b) Flavodoxin-like Class I glutamine amidotransferase-like Class I glutamine amidotransferases (GAT) Carbamoyl phosphate synthetase, small subunit C- terminal domain Escherichia coli [TaxId: 562]
A936-1073 d1cs0a2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
C936-1073 d1cs0c2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
E936-1073 d1cs0e2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
G936-1073 d1cs0g2 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Carbamoyl phosphate synthetase, large subunit allosteric, C- terminal domain Escherichia coli [TaxId: 562]
A1-127 d1cs0a3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
A556-676 d1cs0a4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
C1-127 d1cs0c3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
C556-676 d1cs0c4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
E1-127 d1cs0e3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
E556-676 d1cs0e4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
G1-127 d1cs0g3 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
G556-676 d1cs0g4 Alpha and beta proteins (a/b) PreATP-grasp domain PreATP-grasp domain BC N-terminal domain-like Carbamoyl phosphate synthetase (CPS), large subunit PreATP- grasp domains Escherichia coli [TaxId: 562]
A128-402 d1cs0a5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
A677-935 d1cs0a6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
C128-402 d1cs0c5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
C677-935 d1cs0c6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
E128-402 d1cs0e5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
E677-935 d1cs0e6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
G128-402 d1cs0g5 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]
G677-935 d1cs0g6 Alpha and beta proteins (a+b) ATP-grasp Glutathione synthetase ATP-binding domain- like BC ATP-binding domain-like Carbamoyl phosphate synthetase (CPS), large subunit ATP- binding domains Escherichia coli [TaxId: 562]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1cs0A01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
A2 1cs0A02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
A3 1cs0A03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
A4 1cs0A04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
A5 1cs0A05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
A6 1cs0A06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
A7 1cs0A07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
A8 1cs0A08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
B1 1cs0B01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
B2 1cs0B02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
C1 1cs0C01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
C2 1cs0C02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
C3 1cs0C03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
C4 1cs0C04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
C5 1cs0C05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
C6 1cs0C06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
C7 1cs0C07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
C8 1cs0C08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
D1 1cs0D01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
D2 1cs0D02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E1 1cs0E01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E2 1cs0E02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
E3 1cs0E03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
E4 1cs0E04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
E5 1cs0E05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
E6 1cs0E06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
E7 1cs0E07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
E8 1cs0E08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
F1 1cs0F01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
F2 1cs0F02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
G1 1cs0G01 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
G2 1cs0G02 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
G3 1cs0G03 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
G4 1cs0G04 Mainly Alpha Orthogonal Bundle Carbamoyl Phosphate Synthetase; Chain A, domain 4 Carbamoyl Phosphate Synthetase; Chain A, domain 4
G5 1cs0G05 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
G6 1cs0G06 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 ATP-grasp fold, B domain
G7 1cs0G07 Alpha Beta 2-Layer Sandwich Dna Ligase; domain 1 ATP-grasp fold, A domain
G8 1cs0G08 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold
H1 1cs0H01 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Carbamoyl phosphate synthetase, small subunit N- terminal domain
H2 1cs0H02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00988. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. The ATP binding domain (this one) has an ATP-grasp fold. PFAM PF02786
A PF02787 CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Domain Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. PFAM PF02787
B PF00988 CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain Domain The carbamoyl-phosphate synthase domain is in the amino terminus of protein. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [1]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00289. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. PFAM PF00988
A PF02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain Domain Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines [2]. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See Pfam:PF00988. The small chain has a GATase domain in the carboxyl terminus. See Pfam:PF00117. The ATP binding domain (this one) has an ATP-grasp fold. PFAM PF02786
B PF00117 GATase Glutamine amidotransferase class-I Domain PFAM PF00117
A PF02142 MGS MGS-like domain Domain This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site [1]. PFAM PF02142

Protein Modification Annotation

Type PDB Residue Nr. Description