Macromolecule Annotations for the Entities in PDB 1CD3

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
1 d1cd31_ All alpha proteins Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Bacteriophage phi-X174 [TaxId: 10847]
2 d1cd32_ All alpha proteins Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Bacteriophage phi-X174 [TaxId: 10847]
3 d1cd33_ All alpha proteins Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Bacteriophage phi-X174 [TaxId: 10847]
4 d1cd34_ All alpha proteins Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Scaffolding protein gpD of bacteriophage procapsid Bacteriophage phi-X174 [TaxId: 10847]
F d1cd3f_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) ssDNA viruses Microviridae-like VP Microvirus capsid proteins Bacteriophage phi-X174 [TaxId: 10847]
G d1cd3g_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) ssDNA viruses Microviridae-like VP Microvirus capsid proteins Bacteriophage phi-X174 [TaxId: 10847]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF02304 Phage_B Scaffold protein B Family
G PF02306 Phage_G Major spike protein (G protein) Domain This is a family of proteins from single-stranded DNA bacteriophages. Five G proteins, each a tight beta barrel, from twelve surface spikes. PFAM PF02306
1 PF02925 gpD Bacteriophage scaffolding protein D Domain PFAM PF02925
F PF02305 Phage_F Capsid protein (F protein) Domain This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion. PFAM PF02305
F PF02305 Phage_F Capsid protein (F protein) Domain This is a family of proteins from single-stranded DNA bacteriophages. Protein F is the major capsid component, sixty copies of which are found in the virion. PFAM PF02305

Protein Modification Annotation

Type PDB Residue Nr. Description