Macromolecule Annotations for the Entities in PDB 1C0M

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A217-269 d1c0ma1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase Rous sarcoma virus RSV [TaxId: 11886]
B217-269 d1c0mb1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase Rous sarcoma virus RSV [TaxId: 11886]
C217-270 d1c0mc1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase Rous sarcoma virus RSV [TaxId: 11886]
D217-269 d1c0md1 All beta proteins SH3-like barrel DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase DNA-binding domain of retroviral integrase Rous sarcoma virus RSV [TaxId: 11886]
A49-216 d1c0ma2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain Rous sarcoma virus RSV [TaxId: 11886]
B54-216 d1c0mb2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain Rous sarcoma virus RSV [TaxId: 11886]
C49-216 d1c0mc2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain Rous sarcoma virus RSV [TaxId: 11886]
D54-216 d1c0md2 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Retroviral integrase, catalytic domain Rous sarcoma virus RSV [TaxId: 11886]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF00665 rve Integrase core domain Domain Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1]. PFAM PF00665
A PF00552 IN_DBD_C Integrase DNA binding domain Domain Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This domain is the carboxyl terminal domain that is a non-specific DNA binding domain [1]. PFAM PF00552

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D PROTEIN (INTEGRASE) (1C0M:A,B,C,D)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description