Macromolecule Annotations for the Entities in PDB 1BMF

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A380-510 d1bmfa1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
B380-510 d1bmfb1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
C380-510 d1bmfc1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
D358-475 d1bmfd1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
E358-474 d1bmfe1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
F358-474 d1bmff1 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 3 Cow (Bos taurus) [TaxId: 9913]
A24-94 d1bmfa2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
B24-94 d1bmfb2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
C19-94 d1bmfc2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase alpha subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
D9-81 d1bmfd2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
E9-81 d1bmfe2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
F9-81 d1bmff2 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase- like N-terminal domain of alpha and beta subunits of F1 ATP synthase N-terminal domain of alpha and beta subunits of F1 ATP synthase F1 ATP synthase beta subunit, domain 1 Cow (Bos taurus) [TaxId: 9913]
A95-379 d1bmfa3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
B95-379 d1bmfb3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
C95-379 d1bmfc3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of alpha subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
D82-357 d1bmfd3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
E82-357 d1bmfe3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
F82-357 d1bmff3 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases RecA protein-like (ATPase-domain) Central domain of beta subunit of F1 ATP synthase Cow (Bos taurus) [TaxId: 9913]
G d1bmfg_ Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit ATP synthase (F1-ATPase), gamma subunit Cow (Bos taurus) [TaxId: 9913]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1bmfA01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
A2 1bmfA02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
A3 1bmfA03 Mainly Alpha Up-down Bundle Lysin
B1 1bmfB01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
B2 1bmfB02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
B3 1bmfB03 Mainly Alpha Up-down Bundle Lysin
C1 1bmfC01 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3
C2 1bmfC02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
C3 1bmfC03 Mainly Alpha Up-down Bundle Lysin
D1 1bmfD01 Mainly Beta Beta Barrel Thrombin, subunit H
D2 1bmfD02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
D3 1bmfD03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
E1 1bmfE01 Mainly Beta Beta Barrel Thrombin, subunit H
E2 1bmfE02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
E3 1bmfE03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
F1 1bmfF01 Mainly Beta Beta Barrel Thrombin, subunit H
F2 1bmfF02 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolases
F3 1bmfF03 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
G 1bmfG00 Mainly Alpha Orthogonal Bundle Helix Hairpins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874
G PF00231 ATP-synt ATP synthase Domain PFAM PF00231
D PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
A PF00306 ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain Domain PFAM PF00306
A PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
D PF00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain Family
D PF02874 ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain Domain This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. PFAM PF02874

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C BOVINE MITOCHONDRIAL F1-ATPASE (1BMF:A,B,C)
D,E,F BOVINE MITOCHONDRIAL F1-ATPASE (1BMF:D,E,F)
G BOVINE MITOCHONDRIAL F1-ATPASE (1BMF:G)