Macromolecule Annotations for the Entities in PDB 1BJ1

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
L1-107 d1bj1l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
H1-123 d1bj1h1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 4 [TaxId: 10090]
J1-107 d1bj1j1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 4 [TaxId: 10090]
K1-123 d1bj1k1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 4 [TaxId: 10090]
L108-213 d1bj1l2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
H124-224 d1bj1h2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
J108-213 d1bj1j2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Human (Homo sapiens) [TaxId: 9606]
K124-224 d1bj1k2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Human (Homo sapiens) [TaxId: 9606]
V d1bj1v_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF Human (Homo sapiens) [TaxId: 9606]
W d1bj1w_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF Human (Homo sapiens) [TaxId: 9606]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
J,L FAB FRAGMENT (1BJ1:J,L)
  • none
  • none
  • none
H,K FAB FRAGMENT (1BJ1:H,K)
  • none
  • none
  • none
V,W VASCULAR ENDOTHELIAL GROWTH FACTOR (1BJ1:V,W)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description