Macromolecule Annotations for the Entities in PDB 1BGX

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
T174-289 d1bgxt1 All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease domain of DNA polymerase Taq Thermus aquaticus [TaxId: 271]
L1-107 d1bgxl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
H5-115 d1bgxh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
L108-211 d1bgxl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
H116-209 d1bgxh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]
T1-173 d1bgxt2 Alpha and beta proteins (a/b) PIN domain-like PIN domain-like 5' to 3' exonuclease catalytic domain 5' to 3' exonuclease domain of DNA polymerase Taq Thermus aquaticus [TaxId: 271]
T290-422 d1bgxt3 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Exonuclease domain of prokaryotic DNA polymerase Thermus aquaticus [TaxId: 271]
T423-832 d1bgxt4 Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I DNA polymerase I (Klenow fragment) Thermus aquaticus [TaxId: 271]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
T PF02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain Domain PFAM PF02739
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
T PF01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold Domain PFAM PF01367
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
T PF00476 DNA_pol_A DNA polymerase family A Family
T PF09281 Taq-exonuc Taq polymerase, exonuclease Domain Members of this family are found in prokaryotic Taq DNA polymerase, where they assume a ribonuclease H-like motif. The domain confers 5'-3' exonuclease activity to the polymerase [1]. PFAM PF09281

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description