Macromolecule Annotations for the Entities in PDB 1BDX

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A156-203 d1bdxa1 All alpha proteins RuvA C-terminal domain-like DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain Escherichia coli [TaxId: 562]
B156-203 d1bdxb1 All alpha proteins RuvA C-terminal domain-like DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain Escherichia coli [TaxId: 562]
C156-203 d1bdxc1 All alpha proteins RuvA C-terminal domain-like DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain Escherichia coli [TaxId: 562]
D156-203 d1bdxd1 All alpha proteins RuvA C-terminal domain-like DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain DNA helicase RuvA subunit, C-terminal domain Escherichia coli [TaxId: 562]
A65-142 d1bdxa2 All alpha proteins SAM domain-like RuvA domain 2-like DNA helicase RuvA subunit, middle domain DNA helicase RuvA subunit, middle domain Escherichia coli [TaxId: 562]
B65-142 d1bdxb2 All alpha proteins SAM domain-like RuvA domain 2-like DNA helicase RuvA subunit, middle domain DNA helicase RuvA subunit, middle domain Escherichia coli [TaxId: 562]
C65-142 d1bdxc2 All alpha proteins SAM domain-like RuvA domain 2-like DNA helicase RuvA subunit, middle domain DNA helicase RuvA subunit, middle domain Escherichia coli [TaxId: 562]
D65-142 d1bdxd2 All alpha proteins SAM domain-like RuvA domain 2-like DNA helicase RuvA subunit, middle domain DNA helicase RuvA subunit, middle domain Escherichia coli [TaxId: 562]
A1-64 d1bdxa3 All beta proteins OB-fold Nucleic acid-binding proteins DNA helicase RuvA subunit, N-terminal domain DNA helicase RuvA subunit, N-terminal domain Escherichia coli [TaxId: 562]
B1-64 d1bdxb3 All beta proteins OB-fold Nucleic acid-binding proteins DNA helicase RuvA subunit, N-terminal domain DNA helicase RuvA subunit, N-terminal domain Escherichia coli [TaxId: 562]
C1-64 d1bdxc3 All beta proteins OB-fold Nucleic acid-binding proteins DNA helicase RuvA subunit, N-terminal domain DNA helicase RuvA subunit, N-terminal domain Escherichia coli [TaxId: 562]
D1-64 d1bdxd3 All beta proteins OB-fold Nucleic acid-binding proteins DNA helicase RuvA subunit, N-terminal domain DNA helicase RuvA subunit, N-terminal domain Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF14520 HHH_5 Helix-hairpin-helix domain Domain PFAM PF14520
A PF07499 RuvA_C RuvA, C-terminal domain Domain Homologous recombination is a crucial process in all living organisms. In bacteria, this process the RuvA, RuvB, and RuvC proteins are involved. More specifically the proteins process the Holliday junction DNA. RuvA is comprised of three distinct domains. The domain represents the C-terminal domain and plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB [1]. Within the Holliday junction, the C-terminal domain makes no interaction with DNA [1]. PFAM PF07499
A PF01330 RuvA_N RuvA N terminal domain Domain The N terminal domain of RuvA has an OB-fold structure. This domain forms the RuvA tetramer contacts [1]. PFAM PF01330

Gene Product Annotation Gene Ontology Consortium Homepage

Protein Modification Annotation

Type PDB Residue Nr. Description