Macromolecule Annotations for the Entities in PDB 1BDF

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A2-52,A179-232 d1bdfa1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RNA polymerase alpha Escherichia coli [TaxId: 562]
B1-52,B179-235 d1bdfb1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RNA polymerase alpha Escherichia coli [TaxId: 562]
C1-52,C179-235 d1bdfc1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RNA polymerase alpha Escherichia coli [TaxId: 562]
D1-52,D179-235 d1bdfd1 Alpha and beta proteins (a+b) DCoH-like RBP11-like subunits of RNA polymerase RNA polymerase alpha subunit dimerisation domain RNA polymerase alpha Escherichia coli [TaxId: 562]
A53-178 d1bdfa2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA polymerase alpha subunit Escherichia coli [TaxId: 562]
B53-178 d1bdfb2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA polymerase alpha subunit Escherichia coli [TaxId: 562]
C53-178 d1bdfc2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA polymerase alpha subunit Escherichia coli [TaxId: 562]
D53-178 d1bdfd2 Alpha and beta proteins (a+b) Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit RNA polymerase alpha subunit Escherichia coli [TaxId: 562]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
A PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain Domain The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp. PFAM PF01193
A PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain Domain Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal PFAM PF01000

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B,C,D RNA POLYMERASE ALPHA SUBUNIT (1BDF:A,B,C,D)
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description