Macromolecule Annotations for the Entities in PDB 1AQD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A82-181 d1aqda1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
B93-190 d1aqdb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
D82-179 d1aqdd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
E93-190 d1aqde1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
G82-179 d1aqdg1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
H93-190 d1aqdh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
J82-179 d1aqdj1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
K93-191 d1aqdk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
A3-81 d1aqda2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
B4-92 d1aqdb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
D3-81 d1aqdd2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
E4-92 d1aqde2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
G3-81 d1aqdg2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
H4-92 d1aqdh2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
J3-81 d1aqdj2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
K4-92 d1aqdk2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1aqdA01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
A2 1aqdA02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
B1 1aqdB01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
B2 1aqdB02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
D1 1aqdD01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
D2 1aqdD02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E1 1aqdE01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
E2 1aqdE02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
G1 1aqdG01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
G2 1aqdG02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H1 1aqdH01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
H2 1aqdH02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
J1 1aqdJ01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
J2 1aqdJ02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
K1 1aqdK01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
K2 1aqdK02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
A PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
B PF00969 MHC_II_beta Class II histocompatibility antigen, beta domain Domain PFAM PF00969
A PF00993 MHC_II_alpha Class II histocompatibility antigen, alpha domain Domain PFAM PF00993

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G,J HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN (1AQD:A,D,G,J)
  • none
B,E,H,K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN (1AQD:B,E,H,K)
  • none
C,F,I,L HLA-A2 (1AQD:C,F,I,L)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description