Macromolecule Annotations for the Entities in PDB 1AQD

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A82-181 d1aqda1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
B93-190 d1aqdb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
D82-179 d1aqdd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
E93-190 d1aqde1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
G82-179 d1aqdg1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
H93-190 d1aqdh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
J82-179 d1aqdj1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC alpha chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
K93-191 d1aqdk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Class II MHC beta chain, C-terminal domain Human (Homo sapiens), HLA-DR group [TaxId: 9606]
A3-81 d1aqda2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
B4-92 d1aqdb2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
D3-81 d1aqdd2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
E4-92 d1aqde2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
G3-81 d1aqdg2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
H4-92 d1aqdh2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
J3-81 d1aqdj2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC alpha chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]
K4-92 d1aqdk2 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain Class II MHC beta chain, N-terminal domain Human (Homo sapiens), HLA-DR1 [TaxId: 9606]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
A1 1aqdA01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
A2 1aqdA02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
B1 1aqdB01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
B2 1aqdB02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
D1 1aqdD01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
D2 1aqdD02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
E1 1aqdE01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
E2 1aqdE02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
G1 1aqdG01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
G2 1aqdG02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H1 1aqdH01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
H2 1aqdH02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
J1 1aqdJ01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
J2 1aqdJ02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
K1 1aqdK01 Alpha Beta Roll Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
K2 1aqdK02 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G,J HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN (1AQD:A,D,G,J)
  • none
B,E,H,K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN (1AQD:B,E,H,K)
  • none
C,F,I,L HLA-A2 (1AQD:C,F,I,L)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description