Macromolecule Annotations for the Entities in PDB 1AFV

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1afva_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]
B d1afvb_ All alpha proteins Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain HIV-1 capsid protein Human immunodeficiency virus type 1 [TaxId: 11676]
L1-112 d1afvl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 2 [TaxId: 10090]
H1-120 d1afvh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
M1-112 d1afvm1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL- kappa Mouse (Mus musculus), cluster 2 [TaxId: 10090]
K1-120 d1afvk1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
L113-217 d1afvl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
H121-220 d1afvh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]
M113-217 d1afvm2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin light chain kappa constant domain, CL- kappa Mouse (Mus musculus) [TaxId: 10090]
K121-220 d1afvk2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain- like) Immunoglobulin heavy chain gamma constant domain 1, CH1- gamma Mouse (Mus musculus) [TaxId: 10090]

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
H PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
L PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
L PF07654 C1-set Immunoglobulin C1-set domain Domain PFAM PF07654
H PF07686 V-set Immunoglobulin V-set domain Domain This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. PFAM PF07686
A PF00607 Gag_p24 gag gene protein p24 (core nucleocapsid protein) Family

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,B HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN (1AFV:A,B)
  • none
  • none
L,M ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) (1AFV:L,M)
  • none
  • none
  • none
H,K ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) (1AFV:H,K)
  • none
  • none
  • none

Protein Modification Annotation

Type PDB Residue Nr. Description