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0072 PARTIAL AGONIST PPAR GAMMA COCRYSTAL
Biology and Chemistry Report
4PRG
  •   Structure Details   Hide

    Structure Keywords

    Keywords RECEPTOR
    Text THIAZOLIDINONE, LIGAND-BINDING DOMAIN, NUCLEAR RECEPTOR, ORPHAN RECEPTOR, RECEPTOR

    Polymeric Molecules

    Chain A,B,C,D
    Description PROTEIN (PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA) 
    Fragment LIGAND BINDING DOMAIN, RESIDUES 207-476 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30834.1 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    072  (+/-)(2S,5S)-3-(4-(4-CARBOXYPHENYL)BUTYL)-2-HEPTYL-4-OXO-5-THIAZOLIDINE  C37 H46 N2 O4 S   614.84  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C,D PPARG_HUMAN A8K3G6     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C,D
    Common Name Human
    Scientific Name Homo sapiens  
    Gene hppargamma
    Host Scientific Name Escherichia coli  
    Host Genus Escherichia
    Description Plasmid Is Prset a


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    3 3p25 5468     peroxisome proliferator-activated receptor gamma PPARG    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs150296212 LS-SNP   dbSNP   A 212 R - > Q Helix 27% (Intermediate) 3 12447480
    rs76480583 LS-SNP   dbSNP   A 238 T - > K Bend 46% (Exposed) 3 12447558
    rs200116144 LS-SNP   dbSNP   A 246 P - > L Coil 19% (Intermediate) 3 12458204
    rs147996578 LS-SNP   dbSNP   A 248 V - > I Beta Ladder 46% (Exposed) 3 12458209
    rs111400984 LS-SNP   dbSNP   A 281 I - > T Helix 15% (Intermediate) 3 12458309 072
    rs121909242 LS-SNP   dbSNP   A 286 Q - > P Helix 9% (Intermediate) 3 12458324
    rs28936407 LS-SNP   dbSNP   A 288 R - > H Helix 29% (Intermediate) 3 12458330 072
    rs72551362 LS-SNP   dbSNP   A 290 V - > M Helix 15% (Intermediate) 3 12458335
    rs139894525 LS-SNP   dbSNP   A 307 V - > L 3/10 Helix 56% (Exposed) 3 12458386
    rs145566594 LS-SNP   dbSNP   A 328 T - > P Helix 0% (Buried) 3 12458449
    rs141683496 LS-SNP   dbSNP   A 343 E - > K 3/10 Helix 66% (Exposed) 3 12458494
    rs140204299 LS-SNP   dbSNP   A 357 R - > Q Coil 40% (Exposed) 3 12458537
    rs188622140 LS-SNP   dbSNP   A 360 F - > C 3/10 Helix 5% (Buried) 3 12458546 072
    rs72551363 LS-SNP   dbSNP   A 360 F - > L 3/10 Helix 5% (Buried) 3 12458547 072
    rs148844673 LS-SNP   dbSNP   A 382 S - > R Helix 18% (Intermediate) 3 12458613
    rs72551364 LS-SNP   dbSNP   A 397 R - > C Bend 7% (Buried) 3 12475399
    rs186728157 LS-SNP   dbSNP   A 427 E - > A Bend 69% (Exposed) 3 12475490
    rs62243567 LS-SNP   dbSNP   A 449 H - > N Helix 3% (Buried) 3 12475555 072
    rs201781800 LS-SNP   dbSNP   A 459 T - > M Turn 37% (Exposed) 3 12475586
    rs121909244 LS-SNP   dbSNP   A 467 P - > L Helix 63% (Exposed) 3 12475610