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Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA
Biology and Chemistry Report
4OO1
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE/RNA
    Text RNA EXOSOME COMPLEX, RNA PROCESSING/DECAY, NUCLEUS, RNA BINDING PROTEIN-RNA complex, HYDROLASE-RNA complex

    Polymeric Molecules

    Chain A
    Description Exosome complex component RRP45 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 34002.1 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 45 
    Chain J
    Description Exosome complex exonuclease RRP6 
    Mutation D238N 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 64613.4 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 6 
    Chain S
    Description POLY A RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 7856.0 
    Source Method synthetic  
    Chain B
    Description Exosome complex component SKI6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 28007.3 
    Source Method genetically manipulated  
    Entity Name Extracellular mutant protein 20, Ribosomal RNA-processing protein 41, Superkiller protein 6 
    Chain C
    Description Exosome complex component RRP43 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 44061.4 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 43 
    Chain D
    Description Exosome complex component RRP46 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24574.5 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 46 
    Chain E
    Description Exosome complex component RRP42 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 29492.8 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 42 
    Chain F
    Description Exosome complex component MTR3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27604.1 
    Source Method genetically manipulated  
    Entity Name mRNA transport regulator 3 
    Chain G
    Description Exosome complex component RRP40 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 26990.9 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 40 
    Chain H
    Description Exosome complex component RRP4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 39877.9 
    Source Method genetically manipulated  
    Entity Name Ribosomal RNA-processing protein 4 
    Chain I
    Description Exosome complex component CSL4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 32026.9 
    Source Method genetically manipulated  
    Entity Name CEP1 synthetic lethal protein 4 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    MES  2-(N-MORPHOLINO)-ETHANESULFONIC ACID  C6 H13 N O4 S   195.24  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
    MPD  (4S)-2-METHYL-2,4-PENTANEDIOL  C6 H14 O2   118.17  View 
    PO4  PHOSPHATE ION  O4 P   94.97  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A RRP45_YEAST D6VSR0     
    B RRP41_YEAST D6VUX7     
    C RRP43_YEAST D6VR45     
    D RRP46_YEAST D6VUM7     
    E RRP42_YEAST D6VRN9     
    F MTR3_YEAST D6VUT8     
    G RRP40_YEAST D6W1S7     
    H RRP4_YEAST D3DL18     
    I CSL4_YEAST D6W0W0     
    J RRP6_YEAST D6W267     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    3.1.13      
    3.1.13      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    34473   U1 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U1 Snrna Molecule. 
    34475   U4 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U4 Snrna Molecule. 
    34476   U5 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U5 Snrna Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain B
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    16075   RRNA Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of RRNA Ribosomal RNA a Structural Constituent of Ribosomes. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    34473   U1 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U1 Snrna Molecule. 
    34475   U4 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U4 Snrna Molecule. 
    34476   U5 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U5 Snrna Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71028   Nuclear MRNA Surveillance  The Set of Processes Involved in Identifying and Degrading Defective or Aberrant Mrnas Within the Nucleus. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71039   Nuclear Polyadenylation Dependent Cut Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Cryptic Unstable Transcript (cut) Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Cut. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain C
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    6402   MRNA Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of MRNA Messenger RNA Which Is Responsible For Carrying the Coded Genetic 'message' Transcribed From DNA to Sites of Protein Assembly At the Ribosomes. 
    16072   RRNA Metabolic Process  The Chemical Reactions and Pathways Involving RRNA Ribosomal RNA a Structural Constituent of Ribosomes. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    43628   Ncrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Non Coding RNA Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5654   Nucleoplasm  That Part of the Nuclear Content Other Than the Chromosomes or the Nucleolus. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain D
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    43628   Ncrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Non Coding RNA Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain E
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    16075   RRNA Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of RRNA Ribosomal RNA a Structural Constituent of Ribosomes. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    43628   Ncrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Non Coding RNA Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain F
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    34475   U4 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U4 Snrna Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71028   Nuclear MRNA Surveillance  The Set of Processes Involved in Identifying and Degrading Defective or Aberrant Mrnas Within the Nucleus. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71039   Nuclear Polyadenylation Dependent Cut Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Cryptic Unstable Transcript (cut) Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Cut. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5730   Nucleolus  A Small Dense Body One or More of Which Are Present in the Nucleus of Eukaryotic Cells. It Is Rich in RNA and Protein Is Not Bounded by a Limiting Membrane and Is Not Seen During Mitosis. Its Prime Function Is the Transcription of the Nucleolar DNA Into 45s Ribosomal Precursor RNA the Processing of This RNA Into 5.8s 18s and 28s Components of Ribosomal RNA and the Association of These Components with 5s RNA and Proteins Synthesized Outside the Nucleolus. This Association Results in the Formation of Ribonucleoprotein Precursors; These Pass Into the Cytoplasm and Mature Into the 40s and 60s Subunits of the Ribosome. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain G
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    43628   Ncrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Non Coding RNA Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    30145   Manganese Ion Binding  Interacting Selectively and Non Covalently with Manganese (mn) Ions. 
    Chain H
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    34475   U4 Snrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a U4 Snrna Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71049   Nuclear Retention of Pre MRNA with Aberrant 3' Ends At the Site of Transcription  The Process Involved in Retention of Mrnas That Have Incorrectly Formed 3' Ends Within the Nucleus At the Site of Transcription. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain I
    GO ID   Ontology GO Term Definition
    467   Exonucleolytic Trimming to Generate Mature 3' End of 5.8s RRNA From Tricistronic RRNA Transcript (ssu RRNA 5.8s RRNA Lsu Rrna)  Exonucleolytic Digestion of a Pre RRNA Molecule to Generate the Mature 3' End of a 5.8s RRNA Molecule Derived From an Originally Tricistronic Pre RRNA Transcript That Contained the Small Subunit (ssu) RRNA the 5.8s RRNA and the Large Subunit (lsu) RRNA in That Order From 5' to 3' Along the Primary Transcript. 
    6364   RRNA Processing  Any Process Involved in the Conversion of a Primary Ribosomal RNA (rrna) Transcript Into One or More Mature RRNA Molecules. 
    34427   Nuclear Transcribed MRNA Catabolic Process Exonucleolytic 3' 5'  The Chemical Reactions and Pathways Resulting in the Breakdown of the MRNA Transcript Body That Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    43628   Ncrna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Non Coding RNA Molecule. 
    70478   Nuclear Transcribed MRNA Catabolic Process 3' 5' Exonucleolytic Nonsense Mediated Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Nuclear Transcribed MRNA Transcript Body of an MRNA in Which an Amino Acid Codon Has Changed to a Nonsense Codon; Occurs When the 3' End Is Not Protected by a 3' Poly(a) Tail; Degradation Proceeds in the 3' to 5' Direction. 
    70481   Nuclear Transcribed MRNA Catabolic Process Non Stop Decay  The Chemical Reactions and Pathways Resulting in the Breakdown of the Transcript Body of a Nuclear Transcribed MRNA That Is Lacking a Stop Codon. 
    70651   Nonfunctional RRNA Decay  An RRNA Catabolic Process That Results in the Targeted Detection and Degradation of Aberrant Rrnas Contained Within Translationally Defective Ribosomes Thereby Acting As a Quality Control System. 
    71035   Nuclear Polyadenylation Dependent RRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Ribosomal RNA (rrna) Molecule Including RNA Fragments Released As Part of Processing the Primary Transcript Into Multiple Mature RRNA Species Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Rrna. 
    71038   Nuclear Polyadenylation Dependent TRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of an Aberrant or Incorrectly Modified Transfer RNA (trna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Trna. 
    71042   Nuclear Polyadenylation Dependent MRNA Catabolic Process  The Chemical Reactions and Pathways Occurring in the Nucleus and Resulting in the Breakdown of a Messenger RNA (mrna) Molecule Initiated by the Enzymatic Addition of a Sequence of Adenylyl Residues (polyadenylation) At the 3' End the Target Mrna. 
    71051   Polyadenylation Dependent Snorna 3' End Processing  Any Process Involved in Forming the Mature 3' End of a Snorna Molecule Linked to Prior Polyadenylation of the 3' End of the Precursor Snorna. 
    176   Nuclear Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Nucleus. 
    177   Cytoplasmic Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases Found in the Cytoplasm. 
    178   Exosome (rnase Complex)  Complex of 3' 5' Exoribonucleases. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    3674   Molecular_function  Elemental Activities Such As Catalysis or Binding Describing the Actions of a Gene Product At the Molecular Level. a Given Gene Product May Exhibit One or More Molecular Functions. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    Chain J
    GO ID   Ontology GO Term Definition
    6139   Nucleobase Containing Compound Metabolic Process  Any Cellular Metabolic Process Involving Nucleobases Nucleosides Nucleotides and Nucleic Acids. 
    44237   Cellular Metabolic Process  The Chemical Reactions and Pathways by Which Individual Cells Transform Chemical Substances. 
    5622   Intracellular  The Living Contents of a Cell; the Matter Contained Within (but Not Including) the Plasma Membrane Usually Taken to Exclude Large Vacuoles and Masses of Secretory or Ingested Material. in Eukaryotes It Includes the Nucleus and Cytoplasm. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    8408   3' 5' Exonuclease Activity  Catalysis of the Hydrolysis of Ester Linkages Within Nucleic Acids by Removing Nucleotide Residues From the 3' End. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain J
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp6
    Gene rrp6, unc733, yor001w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain I
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Csl4
    Gene csl4, n1154, ski4, ynl232w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain H
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp4
    Gene rrp4, yhr069c
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain G
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp40
    Gene rrp40, yol142w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain F
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp42/mtr3
    Gene g6676, mtr3, ygr158c
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain E
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp42/mtr3
    Gene rrp42, ydl111c
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain D
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp46/rrp43
    Gene rrp46, ygr095c
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain C
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp46/rrp43
    Gene rrp43, ycr035c, ycr35c, ycr522
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain B
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp41/rrp45
    Gene ecm20, g7587, rrp41, ski6, ygr195w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Chain A
    Common Name Baker's Yeast
    Scientific Name Saccharomyces cerevisiae  
    Strain S288C
    Details Expressed As Smt3 Rrp41/rrp45
    Gene d9954.1, rrp45, ydr280w
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Ril
    Host Vector Type Plasmid
    Host Plasmid Name pSmt3 pRSFDue1-1


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    XV - 854162     Rrp6p RRP6    
    XV - 854023     Rrp40p RRP40    
    IV - 851874     exosome non-catalytic core subunit RRP45 RRP45    
    IV - 851447     Rrp42p RRP42    
    VII - 853109     Ski6p SKI6    
    VII - 852987     Rrp46p RRP46    
    VII - 853062     Mtr3p MTR3    
    XIV - 855489     Csl4p CSL4    
    III - 850401     Rrp43p RRP43    
    VIII - 856466     Rrp4p RRP4