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Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA
Biology and Chemistry Report
4MDE
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/DNA
    Text RNA repair, P-loop phosphotransferase, transferase, HYDROLASE-DNA complex, TRANSFERASE-DNA complex

    Polymeric Molecules

    Chain A,B
    Description Metallophosphoesterase 
    Mutation D38N, L137M 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 19487.5 
    Source Method genetically manipulated  
    Chain C,D
    Description DNA (5'-D(P*CP*CP*TP*GP*T)-3') 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polydeoxyribonucleotide 
    Formula Weight 1471.0 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    GDP  GUANOSINE-5'-DIPHOSPHATE  C10 H15 N5 O11 P2   443.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B A3DJ38_CLOTH A3DJ38     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Clostridium thermocellum  
    Strain ATCC 27405 / DSM 1237
    Gene cthe_2768
    Host Scientific Name Escherichia coli