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Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA
Biology and Chemistry Report
4LCK
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOMAL PROTEIN/RNA
    Text riboswitch mRNA, tRNA-mRNA complex, gene expression regulation, bacteria, RIBOSOMAL PROTEIN-RNA complex

    Polymeric Molecules

    Chain A,D
    Description Ribosomal protein YbxF 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 8435.7 
    Source Method genetically manipulated  
    Chain B,E
    Description tRNA-Gly 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 24258.6 
    Source Method synthetic  
    Chain C,F
    Description T-BOX RIBOSWITCH STEM I 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 33108.0 
    Source Method synthetic  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    MG  MAGNESIUM ION  Mg   24.31  View 
    SR  STRONTIUM ION  Sr   87.62  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,D RXL7_BACSU P46350     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,D
    GO ID   Ontology GO Term Definition
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5840   Ribosome  An Intracellular Organelle About 200 a in Diameter Consisting of RNA and Protein. It Is the Site of Protein Biosynthesis Resulting From Translation of Messenger RNA (mrna). It Consists of Two Subunits One Large and One Small Each Containing Only Protein and Rna. Both the Ribosome and Its Subunits Are Characterized by Their Sedimentation Coefficients Expressed in Svedberg Units (symbol: S). Hence the Prokaryotic Ribosome (70s) Comprises a Large (50s) Subunit and a Small (30s) Subunit While the Eukaryotic Ribosome (80s) Comprises a Large (60s) Subunit and a Small (40s) Subunit. Two Sites On the Ribosomal Large Subunit Are Involved in Translation Namely the Aminoacyl Site (a Site) and Peptidyl Site (p Site). Ribosomes From Prokaryotes Eukaryotes Mitochondria and Chloroplasts Have Characteristically Distinct Ribosomal Proteins. 
    30529   Ribonucleoprotein Complex  A Macromolecular Complex Containing Both Protein and RNA Molecules. 
    3723   RNA Binding  Interacting Selectively and Non Covalently with an RNA Molecule or a Portion Thereof. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,D
    Scientific Name Bacillus subtilis subsp. subtilis  
    Strain 168
    Gene rplgb, ybab, ybxf, bsu01090
    Host Scientific Name Escherichia coli  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 936829     ribosome-associated protein L7Ae-like YBXF