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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 50S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBT (30S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Biology and Chemistry Report
4KBU
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME/ANTIBIOTIC
    Text GDPNP, chimeric hybrid state ribosome, translocation intermediate, EF-G, mRNA, tRNA, RIBOSOME-ANTIBIOTIC complex

    Polymeric Molecules

    Chain C
    Description 50S ribosomal protein L1 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24741.7 
    Source Method natural source  
    Chain P
    Description 50S ribosomal protein L15 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15858.7 
    Source Method natural source  
    Chain Q
    Description 50S ribosomal protein L16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15994.0 
    Source Method natural source  
    Chain R
    Description 50S ribosomal protein L17 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13619.1 
    Source Method natural source  
    Chain S
    Description 50S ribosomal protein L18 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10999.0 
    Source Method natural source  
    Entity Name TL24 
    Chain T
    Description 50S ribosomal protein L19 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16290.0 
    Source Method natural source  
    Chain U
    Description 50S ribosomal protein L20 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13648.2 
    Source Method natural source  
    Chain V
    Description 50S ribosomal protein L21 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11069.3 
    Source Method natural source  
    Chain W
    Description 50S ribosomal protein L22 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12808.2 
    Source Method natural source  
    Chain X
    Description 50S ribosomal protein L23 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10386.4 
    Source Method natural source  
    Chain Y
    Description 50S ribosomal protein L24 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11696.3 
    Source Method natural source  
    Chain D
    Description 50S ribosomal protein L2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 30401.6 
    Source Method natural source  
    Chain Z
    Description 50S ribosomal protein L25 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20879.2 
    Source Method natural source  
    Entity Name TL5 
    Chain 0
    Description 50S ribosomal protein L27 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9398.0 
    Source Method natural source  
    Chain 1
    Description 50S ribosomal protein L28 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10430.5 
    Source Method natural source  
    Chain 4
    Description 50S ribosomal protein L31 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 3893.6 
    Source Method natural source  
    Chain N
    Description 50S ribosomal protein L13 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15699.8 
    Source Method natural source  
    Chain 2
    Description 50S ribosomal protein L29 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8539.2 
    Source Method natural source  
    Chain 3
    Description 50S ribosomal protein L30 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6799.2 
    Source Method natural source  
    Chain 5
    Description 50S ribosomal protein L32 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6590.9 
    Source Method natural source  
    Chain 6
    Description 50S ribosomal protein L33 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6214.5 
    Source Method natural source  
    Chain 7
    Description 50S ribosomal protein L34 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 6132.5 
    Source Method natural source  
    Chain E
    Description 50S ribosomal protein L3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22321.2 
    Source Method natural source  
    Chain 8
    Description 50S ribosomal protein L35 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7375.1 
    Source Method natural source  
    Chain 9
    Description 50S ribosomal protein L36 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 4435.4 
    Source Method natural source  
    Entity Name Ribosomal protein B 
    Chain e
    Description 50S ribosomal protein L7/L12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10280.2 
    Source Method natural source  
    Chain f,g
    Description 50S ribosomal protein L7/L12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 2656.3 
    Source Method natural source  
    Chain h
    Description 50S ribosomal protein L7/L12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 2571.2 
    Source Method natural source  
    Chain B
    Description 5S ribosomal RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 38553.2 
    Source Method natural source  
    Chain A
    Description 23S ribosomal RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 936303.0 
    Source Method natural source  
    Chain F
    Description 50S ribosomal protein L4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 23071.9 
    Source Method natural source  
    Entity Name L1e 
    Chain G
    Description 50S ribosomal protein L5 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 20930.6 
    Source Method natural source  
    Chain H
    Description 50S ribosomal protein L6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18088.2 
    Source Method natural source  
    Chain J
    Description 50S ribosomal protein L10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14485.9 
    Source Method natural source  
    Chain K
    Description 50S ribosomal protein L11 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14754.3 
    Source Method natural source  
    Chain O
    Description 50S ribosomal protein L14 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13323.7 
    Source Method natural source  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain A
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain B
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain h
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain f,g
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain e
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 9
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 8
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 7
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 6
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 5
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 3
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 2
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain R
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain Q
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain P
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain O
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain K
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain J
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain H
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain G
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain F
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain E
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain D
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain C
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain S
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain T
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain U
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain V
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain W
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain X
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain Y
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain Z
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 0
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 1
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain 4
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain N
    Scientific Name Thermus thermophilus  
    Strain HB27

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    - - 3169919     50S ribosomal protein L34 RPMH