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70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. This entry contains 30S ribosomal subunit A. The full asymmetric unit also contains PDB entries 4KBU (50S subunit A), 4KBV (30S subunit B), and 4KBW (50S subunit B).
Biology and Chemistry Report
4KBT
  •   Structure Details   Hide

    Structure Keywords

    Keywords RIBOSOME/ANTIBIOTIC
    Text GDPNP, chimeric hybrid state ribosome, translocation intermediate, EF-G, mRNA, tRNA, RIBOSOME-ANTIBIOTIC complex

    Polymeric Molecules

    Chain B
    Description 30S ribosomal protein S2 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 27116.6 
    Source Method natural source  
    Chain K
    Description 30S ribosomal protein S11 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 12606.5 
    Source Method natural source  
    Chain L
    Description 30S ribosomal protein S12 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 13875.5 
    Source Method natural source  
    Chain M
    Description 30S ribosomal protein S13 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14207.8 
    Source Method natural source  
    Chain N
    Description 30S ribosomal protein S14 type Z 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 7027.6 
    Source Method natural source  
    Chain O
    Description 30S ribosomal protein S15 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10447.3 
    Source Method natural source  
    Chain P
    Description 30S ribosomal protein S16 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9995.7 
    Source Method natural source  
    Chain Q
    Description 30S ribosomal protein S17 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11879.2 
    Source Method natural source  
    Chain R
    Description 30S ribosomal protein S18 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 8155.9 
    Source Method natural source  
    Chain S
    Description 30S ribosomal protein S19 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 9006.6 
    Source Method natural source  
    Chain T
    Description 30S ribosomal protein S20 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 10907.2 
    Source Method natural source  
    Chain C
    Description 30S ribosomal protein S3 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 22975.8 
    Source Method natural source  
    Chain A
    Description 16S ribosomal RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 490595.0 
    Source Method natural source  
    Chain V
    Description messenger RNA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 5907.7 
    Source Method natural source  
    Chain W
    Description tRNA-Met 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polyribonucleotide 
    Formula Weight 24728.9 
    Source Method natural source  
    Chain Y
    Description Elongation factor G 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 76548.4 
    Source Method natural source  
    Entity Name EF-G 
    Chain U
    Description Viomycin 
    Nonstandard Linkage no 
    Nonstandard Monomers yes 
    Polymer Type polypeptide(L) 
    Formula Weight 703.7 
    Source Method natural source  
    Chain D
    Description 30S ribosomal protein S4 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 24242.4 
    Source Method natural source  
    Chain E
    Description 30S ribosomal protein S5 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 16460.3 
    Source Method natural source  
    Chain F
    Description 30S ribosomal protein S6 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11988.9 
    Source Method natural source  
    Entity Name TS9 
    Chain G
    Description 30S ribosomal protein S7 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 17919.9 
    Source Method natural source  
    Chain H
    Description 30S ribosomal protein S8 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 15868.7 
    Source Method natural source  
    Chain I
    Description 30S ribosomal protein S9 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 14298.6 
    Source Method natural source  
    Chain J
    Description 30S ribosomal protein S10 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 11398.4 
    Source Method natural source  

     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)

     
  •   Gene Details   Hide

    Natural Source

    Chain U
    Scientific Name Streptomyces  
    Chain Y
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain W
    Scientific Name Escherichia coli  
    Chain V
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain A
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain T
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain S
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain R
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain Q
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain P
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain O
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain N
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain B
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain C
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain D
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain E
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain F
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain G
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain H
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain I
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain J
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain K
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain L
    Scientific Name Thermus thermophilus  
    Strain HB27
    Chain M
    Scientific Name Thermus thermophilus  
    Strain HB27