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Open and closed forms of I1790Y human PRP8 RNase H-like domain with bound Mg ion
Biology and Chemistry Report
4JKD
  •   Structure Details   Hide

    Structure Keywords

    Keywords RNA BINDING PROTEIN
    Text metalloprotein, conformational change, RNA BINDING PROTEIN

    Polymeric Molecules

    Chain A,B
    Description Pre-mRNA-processing-splicing factor 8 
    Fragment PRP8 RNase H-like domain, UNP residues 1769-1990' 
    Mutation I1790Y 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 25589.0 
    Source Method genetically manipulated  
    Entity Name 220 kDa U5 snRNP-specific protein, PRP8 homolog, Splicing factor Prp8, p220 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CL  CHLORIDE ION  Cl   35.45  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B PRP8_HUMAN O14547     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    398   MRNA Splicing Via Spliceosome  The Joining Together of Exons From One or More Primary Transcripts of Messenger RNA (mrna) and the Excision of Intron Sequences Via a Spliceosomal Mechanism So That MRNA Consisting Only of the Joined Exons Is Produced. 
    5681   Spliceosomal Complex  Any of a Series of Ribonucleoprotein Complexes That Contain RNA and Small Nuclear Ribonucleoproteins (snrnps) and Are Formed Sequentially During the Splicing of a Messenger RNA Primary Transcript to Excise an Intron. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Homo sapiens  
    Gene prp8, prpc8, prpf8
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 (de3) Rosetta2
    Host Vector Type Plasmid
    Host Plasmid Name pMalC2-E


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    17 17p13.3 10594     pre-mRNA processing factor 8 PRPF8