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Crystal structure of Zn(II)-bound YjiA GTPase from E. coli
Biology and Chemistry Report
4IXM
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text P-loop GTPase, G-protein, metal homeostasis, HYDROLASE

    Polymeric Molecules

    Chain A,B
    Description Uncharacterized GTP-binding protein YjiA 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 35696.9 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SO4  SULFATE ION  O4 S   96.06  View 
    ZN  ZINC ION  Zn   65.41  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B YJIA_ECOLI P24203     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    6184   GTP Catabolic Process  The Chemical Reactions and Pathways Resulting in the Breakdown of GTP Guanosine Triphosphate. 
    6974   Cellular Response to DNA Damage Stimulus  Any Process That Results in a Change in State or Activity of a Cell (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus Indicating Damage to Its DNA From Environmental Insults or Errors During Metabolism. 
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3924   Gtpase Activity  Catalysis of the Reaction: GTP + H2o = GDP + Phosphate. 
    5525   GTP Binding  Interacting Selectively and Non Covalently with GTP Guanosine Triphosphate. 
    42802   Identical Protein Binding  Interacting Selectively and Non Covalently with an Identical Protein or Proteins. 
    46914   Transition Metal Ion Binding  Interacting Selectively and Non Covalently with a Transition Metal Ions; a Transition Metal Is an Element Whose Atom Has an Incomplete D Subshell of Extranuclear Electrons or Which Gives Rise to a Cation or Cations with an Incomplete D Subshell. Transition Metals Often Have More Than One Valency State. Biologically Relevant Transition Metals Include Vanadium Manganese Iron Copper Cobalt Nickel Molybdenum and Silver. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Scientific Name Escherichia coli  
    Strain K-12
    Gene b4352, jw5790, yjia
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET24b