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Crystal structure of fructuronate reductase (ydfI) from E. coli CFT073 (EFI TARGET EFI-506389) complexed with NADH and D-mannonate
Biology and Chemistry Report
4IM7
  •   Structure Details   Hide

    Structure Keywords

    Keywords OXIDOREDUCTASE
    Text rossmann fold, OXIDOREDUCTASE

    Polymeric Molecules

    Chain A
    Description Hypothetical oxidoreductase ydfI 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 55932.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    CS2  D-MANNONIC ACID  C6 H12 O7   196.16  View 
    NAI  1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE  C21 H29 N7 O14 P2   665.44  View 
    SO4  SULFATE ION  O4 S   96.06  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A Q8FHD0_ECOL6 Q8FHD0     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    8152   Metabolic Process  The Chemical Reactions and Pathways Including Anabolism and Catabolism by Which Living Organisms Transform Chemical Substances. Metabolic Processes Typically Transform Small Molecules But Also Include Macromolecular Processes Such As DNA Repair and Replication and Protein Synthesis and Degradation. 
    19594   Mannitol Metabolic Process  The Chemical Reactions and Pathways Involving Mannitol the Alditol Derived From D Mannose by Reduction of the Aldehyde Group. 
    55114   Oxidation Reduction Process  A Metabolic Process That Results in the Removal or Addition of One or More Electrons to or From a Substance with or Without the Concomitant Removal or Addition of a Proton or Protons. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3824   Catalytic Activity  Catalysis of a Biochemical Reaction At Physiological Temperatures. in Biologically Catalyzed Reactions the Reactants Are Known As Substrates and the Catalysts Are Naturally Occurring Macromolecular Substances Known As Enzymes. Enzymes Possess Specific Binding Sites For Substrates and Are Usually Composed Wholly or Largely of Protein But RNA That Has Catalytic Activity (ribozyme) Is Often Also Regarded As Enzymatic. 
    16491   Oxidoreductase Activity  Catalysis of an Oxidation Reduction (redox) Reaction a Reversible Chemical Reaction in Which the Oxidation State of an Atom or Atoms Within a Molecule Is Altered. One Substrate Acts As a Hydrogen or Electron Donor and Becomes Oxidized While the Other Acts As Hydrogen or Electron Acceptor and Becomes Reduced. 
    16616   Oxidoreductase Activity Acting On the Ch Oh Group of Donors NAD or Nadp As Acceptor  Catalysis of an Oxidation Reduction (redox) Reaction in Which a Ch Oh Group Acts As a Hydrogen or Electron Donor and Reduces Nad+ or Nadp. 
    50662   Coenzyme Binding  Interacting Selectively and Non Covalently with a Coenzyme Any of Various Nonprotein Organic Cofactors That Are Required in Addition to an Enzyme and a Substrate For an Enzymatic Reaction to Proceed. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Scientific Name Escherichia coli  
    Strain CFT073
    Gene c1968, ydfi
    Host Scientific Name Escherichia coli  
    Host Strain Bl21(de3)
    Host Vector Type Plasmid
    Host Plasmid Name pET15