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Structure of Tank-Binding Kinase 1
Biology and Chemistry Report
4IM3
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE/TRANSFERASE INHIBITOR
    Text kinase, serine/threonine kinase, BX795, pCMNP, TRANSFERASE-TRANSFERASE INHIBITOR complex

    Polymeric Molecules

    Chain A
    Description Serine/threonine-protein kinase TBK1 
    Fragment residues 1 to 657 
    Mutation D135N 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 76185.8 
    Source Method genetically manipulated  
    Entity Name NF-kappa-B-activating kinase, T2K, TANK-binding kinase 1 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    BX7  N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide  C23 H26 I N7 O2 S   591.47  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    HG  MERCURY (II) ION  Hg   200.59  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A TBK1_HUMAN A8K4S4     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    2.7.11.1      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A
    GO ID   Ontology GO Term Definition
    2218   Activation of Innate Immune Response  Any Process That Initiates an Innate Immune Response. Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. Examples of This Process Include Activation of the Hypersensitive Response of Arabidopsis Thaliana and Activation of Any Nod or Tlr Signaling Pathway in Vertebrate Species. 
    2224   Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    2376   Immune System Process  Any Process Involved in the Development or Functioning of the Immune System an Organismal System For Calibrated Responses to Potential Internal or Invasive Threats. 
    2756   Myd88 Independent Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor Not Relying On the Myd88 Adaptor Molecule. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    6468   Protein Phosphorylation  The Process of Introducing a Phosphate Group On to a Protein. 
    6954   Inflammatory Response  The Immediate Defensive Reaction (by Vertebrate Tissue) to Infection or Injury Caused by Chemical or Physical Agents. the Process Is Characterized by Local Vasodilation Extravasation of Plasma Into Intercellular Spaces and Accumulation of White Blood Cells and Macrophages. 
    7249   I Kappab Kinase/nf Kappab Signaling  The Process in Which a Signal Is Passed On to Downstream Components Within the Cell Through the I Kappab Kinase (ikk) Dependent Activation of Nf Kappab. the Cascade Begins with Activation of a Trimeric Ikk Complex (consisting of Catalytic Kinase Subunits Ikkalpha And/or Ikkbeta and the Regulatory Scaffold Protein Nemo) and Ends with the Regulation of Transcription of Target Genes by Nf Kappab. in a Resting State Nf Kappab Dimers Are Bound to I Kappab Proteins Sequestering Nf Kappab in the Cytoplasm. Phosphorylation of I Kappab Targets I Kappab For Ubiquitination and Proteasomal Degradation Thus Releasing the Nf Kappab Dimers Which Can Translocate to the Nucleus to Bind DNA and Regulate Transcription. 
    9615   Response to Virus  Any Process That Results in a Change in State or Activity of a Cell or an Organism (in Terms of Movement Secretion Enzyme Production Gene Expression Etc.) As a Result of a Stimulus From a Virus. 
    10629   Negative Regulation of Gene Expression  Any Process That Decreases the Frequency Rate or Extent of Gene Expression. Gene Expression Is the Process in Which a Gene's Coding Sequence Is Converted Into a Mature Gene Product or Products (proteins or Rna). This Includes the Production of an RNA Transcript As Well As Any Processing to Produce a Mature RNA Product or an MRNA (for Protein Coding Genes) and the Translation of That MRNA Into Protein. Some Protein Processing Events May Be Included When They Are Required to Form an Active Form of a Product From an Inactive Precursor Form. 
    16032   Viral Process  A Multi Organism Process in Which a Virus Is a Participant. the Other Participant Is the Host. Includes Infection of a Host Cell Replication of the Viral Genome and Assembly of Progeny Virus Particles. in Some Cases the Viral Genetic Material May Integrate Into the Host Genome and Only Subsequently Under Particular Circumstances 'complete' Its Life Cycle. 
    16310   Phosphorylation  The Process of Introducing a Phosphate Group Into a Molecule Usually with the Formation of a Phosphoric Ester a Phosphoric Anhydride or a Phosphoric Amide. 
    32480   Negative Regulation of Type I Interferon Production  Any Process That Stops Prevents or Reduces the Frequency Rate or Extent of Type I Interferon Production. Type I Interferons Include the Interferon Alpha Beta Delta Episilon Zeta Kappa Tau and Omega Gene Families. 
    32481   Positive Regulation of Type I Interferon Production  Any Process That Activates or Increases the Frequency Rate or Extent of Type I Interferon Production. Type I Interferons Include the Interferon Alpha Beta Delta Episilon Zeta Kappa Tau and Omega Gene Families. 
    32606   Type I Interferon Production  The Appearance of Type I Interferon Due to Biosynthesis or Secretion Following a Cellular Stimulus Resulting in an Increase in Its Intracellular or Extracellular Levels. Type I Interferons Include the Interferon Alpha Beta Delta Episilon Zeta Kappa Tau and Omega Gene Families. 
    32727   Positive Regulation of Interferon Alpha Production  Any Process That Activates or Increases the Frequency Rate or Extent of Interferon Alpha Production. 
    32728   Positive Regulation of Interferon Beta Production  Any Process That Activates or Increases the Frequency Rate or Extent of Interferon Beta Production. 
    33138   Positive Regulation of Peptidyl Serine Phosphorylation  Any Process That Activates or Increases the Frequency Rate or Extent of the Phosphorylation of Peptidyl Serine. 
    34138   Toll Like Receptor 3 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 3. 
    34142   Toll Like Receptor 4 Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to Toll Like Receptor 4. 
    35666   Trif Dependent Toll Like Receptor Signaling Pathway  Any Series of Molecular Signals Generated As a Consequence of Binding to a Toll Like Receptor Where the Trif Adaptor Mediates Transduction of the Signal. Toll Like Receptors Directly Bind Pattern Motifs From a Variety of Microbial Sources to Initiate Innate Immune Response. 
    43123   Positive Regulation of I Kappab Kinase/nf Kappab Signaling  Any Process That Activates or Increases the Frequency Rate or Extent of I Kappab Kinase/nf Kappab Signaling. 
    44565   Dendritic Cell Proliferation  The Expansion of a Dendritic Cell Population by Cell Division. a Dendritic Cell Is a Cell of Hematopoietic Origin Typically Resident in Particular Tissues Specialized in the Uptake Processing and Transport of Antigens to Lymph Nodes For the Purpose of Stimulating an Immune Response Via T Cell Activation. 
    45087   Innate Immune Response  Innate Immune Responses Are Defense Responses Mediated by Germline Encoded Components That Directly Recognize Components of Potential Pathogens. 
    45359   Positive Regulation of Interferon Beta Biosynthetic Process  Any Process That Activates or Increases the Frequency Rate or Extent of the Chemical Reactions and Pathways Resulting in the Formation of Interferon Beta. 
    45944   Positive Regulation of Transcription From RNA Polymerase Ii Promoter  Any Process That Activates or Increases the Frequency Rate or Extent of Transcription From an RNA Polymerase Ii Promoter. 
    50830   Defense Response to Gram Positive Bacterium  Reactions Triggered in Response to the Presence of a Gram Positive Bacterium That Act to Protect the Cell or Organism. 
    51607   Defense Response to Virus  Reactions Triggered in Response to the Presence of a Virus That Act to Protect the Cell or Organism. 
    5737   Cytoplasm  All of the Contents of a Cell Excluding the Plasma Membrane and Nucleus But Including Other Subcellular Structures. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    10008   Endosome Membrane  The Lipid Bilayer Surrounding an Endosome. 
    166   Nucleotide Binding  Interacting Selectively and Non Covalently with a Nucleotide Any Compound Consisting of a Nucleoside That Is Esterified with (ortho)phosphate or an Oligophosphate At Any Hydroxyl Group On the Ribose or Deoxyribose. 
    3676   Nucleic Acid Binding  Interacting Selectively and Non Covalently with Any Nucleic Acid. 
    4672   Protein Kinase Activity  Catalysis of the Phosphorylation of an Amino Acid Residue in a Protein Usually According to the Reaction: a Protein + ATP = a Phosphoprotein + Adp. 
    4674   Protein Serine/threonine Kinase Activity  Catalysis of the Reactions: ATP + Protein Serine = Adp + Protein Serine Phosphate and ATP + Protein Threonine = Adp + Protein Threonine Phosphate. 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 
    5524   ATP Binding  Interacting Selectively and Non Covalently with ATP Adenosine 5' Triphosphate a Universally Important Coenzyme and Enzyme Regulator. 
    16301   Kinase Activity  Catalysis of the Transfer of a Phosphate Group Usually From ATP to a Substrate Molecule. 
    16740   Transferase Activity  Catalysis of the Transfer of a Group E.g. a Methyl Group Glycosyl Group Acyl Group Phosphorus Containing or Other Groups From One Compound (generally Regarded As the Donor) to Another Compound (generally Regarded As the Acceptor). Transferase Is the Systematic Name For Any Enzyme of EC Class 2. 
    16772   Transferase Activity Transferring Phosphorus Containing Groups  Catalysis of the Transfer of a Phosphorus Containing Group From One Compound (donor) to Another (acceptor). 
    51219   Phosphoprotein Binding  Interacting Selectively and Non Covalently with a Phosphorylated Protein. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A
    Common Name Human
    Scientific Name Homo sapiens  
    Gene tbk1, nak
    Host Scientific Name Spodoptera frugiperda  


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q14.1 29110     TANK-binding kinase 1 TBK1