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Crystal structure of the complex of SETD8 with SAM
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Keywords TRANSFERASE
    Text Structural Genomics Consortium, SGC, N-lysine methyltransferase, TRANSFERASE

    Polymeric Molecules

    Chain A,B
    Description N-lysine methyltransferase SETD8 
    Mutation C343S 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 18717.3 
    Source Method genetically manipulated  
    Entity Name H4-K20-HMTase SETD8, Histone-lysine N-methyltransferase SETD8, Lysine N-methyltransferase 5A, PR/SET domain-containing protein 07, PR-Set7, PR/SET07, SET domain-containing protein 8 
    Chain I
    Description helical peptide 
    Fragment SEE REMARK 999 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 869.1 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    SAM  S-ADENOSYLMETHIONINE  C15 H22 N6 O5 S   398.44  View 
    UNX  UNKNOWN ATOM OR ION  X   0.00  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B SETD8_HUMAN Q9NQR1     

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    18024   Histone Lysine N Methyltransferase Activity  Catalysis of the Reaction: S Adenosyl L Methionine + Histone L Lysine = S Adenosyl L Homocysteine + Histone N6 Methyl L Lysine. the Methylation of Peptidyl Lysine in Histones Forms N6 Methyl L Lysine N6 N6 Dimethyl L Lysine and N6 N6 N6 Trimethyl L Lysine Derivatives. 

  •   Gene Details   Hide

    Genetic Source

    Chain I
    Scientific Name Unidentified  
    Host Scientific Name Escherichia coli  

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene setd8, kmt5a, prset7, set07, set8
    Host Scientific Name Escherichia coli  
    Host Strain Bl21 V2r Prare2
    Host Plasmid Name pHIS2

    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    12 12q24.31 387893     SET domain containing (lysine methyltransferase) 8 SETD8