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human atlastin-1 1-446, C-his6, GDPAlF4-
Biology and Chemistry Report
4IDO
  •   Structure Details   Hide

    Structure Keywords

    Keywords HYDROLASE
    Text GTPase, GTP/GDP binding, HYDROLASE

    Polymeric Molecules

    Chain A,B
    Description Atlastin-1 
    Fragment cytoplasmic domain (UNP residues 1-446) 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 52501.9 
    Source Method genetically manipulated  
    Entity Name Brain-specific GTP-binding protein, GTP-binding protein 3, GBP-3, hGBP3, Guanine nucleotide-binding protein 3, Spastic paraplegia 3 protein A 

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ALF  TETRAFLUOROALUMINATE ION  Al F4   102.98  View 
    GDP  GUANOSINE-5'-DIPHOSPHATE  C10 H15 N5 O11 P2   443.20  View 
    MG  MAGNESIUM ION  Mg   24.31  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B ATLA1_HUMAN A6NND5     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    EC, Associated Pathways and Catalytic Sites

    Chain(s) IUBMB KEGG BioCyc
    A B  3.6.5      
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    3924   Gtpase Activity  Catalysis of the Reaction: GTP + H2o = GDP + Phosphate. 
    5525   GTP Binding  Interacting Selectively and Non Covalently with GTP Guanosine Triphosphate. 


     
  •   Gene Details   Hide

    Genetic Source

    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene atl1, gbp3, spg3a
    Host Scientific Name Escherichia coli  
    Host Strain Bl21
    Host Vector Type Plasmid
    Host Plasmid Name pET21


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    14 14q22.1 51062     atlastin GTPase 1 ATL1    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs17850684 LS-SNP   dbSNP   A 43 D - > E Turn 68% (Exposed) 14 51054643
    rs149901427 LS-SNP   dbSNP   A 55 R - > W Helix 78% (Exposed) 14 51054677
    rs200314808 LS-SNP   dbSNP   A 66 E - > Q Beta 22% (Intermediate) 14 51054710
    rs182963739 LS-SNP   dbSNP   A 75 A - > T Beta 20% (Intermediate) 14 51054737 GDP,ALF
    rs145204580 LS-SNP   dbSNP   A 102 D - > E Coil 65% (Exposed) 14 51057682
    rs112496709 LS-SNP   dbSNP   A 108 T - > A Coil 75% (Exposed) 14 51057698
    rs149031604 LS-SNP   dbSNP   A 147 T - > I Beta Ladder 1% (Buried) 14 51058275 ALF,MG
    rs137852657 LS-SNP   dbSNP   A 156 T - > I Coil 6% (Buried) 14 51058302
    rs119476051 LS-SNP   dbSNP   A 157 L - > W Helix 2% (Buried) 14 51058305
    rs17850683 LS-SNP   dbSNP   A 193 F - > C Helix 1% (Buried) 14 51062298
    rs147839037 LS-SNP   dbSNP   A 208 P - > S Bend 13% (Intermediate) 14 51062342
    rs119476049 LS-SNP   dbSNP   A 217 R - > Q Beta Ladder 7% (Buried) 14 51079996 GDP
    rs119476046 LS-SNP   dbSNP   A 239 R - > C Helix 3% (Buried) 14 51080061
    rs119476048 LS-SNP   dbSNP   A 258 H - > R Helix 40% (Exposed) 14 51081140
    rs119476047 LS-SNP   dbSNP   A 259 S - > Y Helix 46% (Exposed) 14 51081143
    rs145745189 LS-SNP   dbSNP   A 265 S - > F Beta Ladder 22% (Intermediate) 14 51081161
    rs75554510 LS-SNP   dbSNP   A 272 P - > H Coil 10% (Intermediate) 14 51081182 GDP
    rs113993376 LS-SNP   dbSNP   A 274 L - > S Helix 26% (Intermediate) 14 51081188
    rs185344018 LS-SNP   dbSNP   A 282 F - > V Coil 8% (Buried) 14 51081211 GDP
    rs199780752 LS-SNP   dbSNP   A 314 E - > Q Beta Ladder 36% (Intermediate) 14 51087394
    rs138807792 LS-SNP   dbSNP   A 366 T - > I Helix 27% (Intermediate) 14 51089944
    rs148203226 LS-SNP   dbSNP   A 397 E - > K Helix 42% (Exposed) 14 51094818
    rs201240362 LS-SNP   dbSNP   A 405 V - > M Bend 23% (Intermediate) 14 51094842
    rs28939094 LS-SNP   dbSNP   A 408 M - > V Turn 1% (Buried) 14 51094851
    rs119476050 LS-SNP   dbSNP   A 415 R - > W Helix 60% (Exposed) 14 51094872
    rs143038913 LS-SNP   dbSNP   A 420 Q - > R Helix 29% (Intermediate) 14 51094888
    rs199904312 LS-SNP   dbSNP   A 442 F - > L Coil 76% (Exposed) 14 51094953