An Information Portal to 111749 Biological Macromolecular Structures

X-ray structure of NikA in complex with Ni-(L-His)2
Biology and Chemistry Report
  •   Structure Details   Hide

    Structure Keywords

    Text Transport protein

    Polymeric Molecules

    Chain A,B,C
    Description Nickel-binding periplasmic protein 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 56361.4 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    ACT  ACETATE ION  C2 H3 O2   59.04  View 
    CL  CHLORIDE ION  Cl   35.45  View 
    GOL  GLYCEROL  C3 H8 O3   92.09  View 
    HIS  HISTIDINE  C6 H10 N3 O2   156.16  View 
    NI  NICKEL (II) ION  Ni   58.69  View 
    SO4  SULFATE ION  O4 S   96.06  View 
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B,C NIKA_ECOLI P33590     

    Metabolic Pathway(s)

    Chain(s) Biocyc/Metacyc ID
    A B C   
    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B,C
    GO ID   Ontology GO Term Definition
    6810   Transport  The Directed Movement of Substances (such As Macromolecules Small Molecules Ions) Into Out of or Within a Cell or Between Cells or Within a Multicellular Organism by Means of Some Agent Such As a Transporter or Pore. 
    15675   Nickel Cation Transport  The Directed Movement of Nickel (ni) Cations Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    50919   Negative Chemotaxis  The Directed Movement of a Motile Cell or Organism Towards a Lower Concentration of a Chemical. 
    55085   Transmembrane Transport  The Process in Which a Solute Is Transported From One Side of a Membrane to the Other. 
    30288   Outer Membrane Bounded Periplasmic Space  The Region Between the Inner (cytoplasmic or Plasma) Membrane and Outer Membrane of Organisms with Two Membranes Such As Gram Negative Bacteria. These Periplasmic Spaces Are Relatively Thick and Contain a Thin Cell Wall. 
    42597   Periplasmic Space  The Region Between the Inner (cytoplasmic) and Outer Membrane (gram Negative Bacteria) or Cytoplasmic Membrane and Cell Wall (fungi and Gram Positive Bacteria). 
    43190   ATP Binding Cassette (abc) Transporter Complex  A Complex For the Transport of Metabolites Into and Out of the Cell Typically Comprised of Four Domains; Two Membrane Associated Domains and Two ATP Binding Domains At the Intracellular Face of the Membrane That Form a Central Pore Through the Plasma Membrane. Each of the Four Core Domains May Be Encoded As a Separate Polypeptide or the Domains Can Be Fused in Any One of a Number of Ways Into Multidomain Polypeptides. in Bacteria and Archaebacteria Abc Transporters Also Include Substrate Binding Proteins to Bind Substrate External to the Cytoplasm and Deliver It to the Transporter. 
    16151   Nickel Cation Binding  Interacting Selectively and Non Covalently with Nickel (ni) Cations. 
    20037   Heme Binding  Interacting Selectively and Non Covalently with Heme Any Compound of Iron Complexed in a Porphyrin (tetrapyrrole) Ring. 
    46914   Transition Metal Ion Binding  Interacting Selectively and Non Covalently with a Transition Metal Ions; a Transition Metal Is an Element Whose Atom Has an Incomplete D Subshell of Extranuclear Electrons or Which Gives Rise to a Cation or Cations with an Incomplete D Subshell. Transition Metals Often Have More Than One Valency State. Biologically Relevant Transition Metals Include Vanadium Manganese Iron Copper Cobalt Nickel Molybdenum and Silver. 

  •   Gene Details   Hide

    Genetic Source

    Chain A,B,C
    Scientific Name Escherichia coli  
    Strain K12
    Gene nika, b3476, jw3441
    Host Scientific Name Escherichia coli