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Crystal structure of human NUP43
Biology and Chemistry Report
4I79
  •   Structure Details   Hide

    Structure Keywords

    Keywords CELL CYCLE
    Text Structural Genomics Consortium, SGC, WD40 repeat, CELL CYCLE

    Polymeric Molecules

    Chain A,B
    Description Nucleoporin Nup43 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 44229.3 
    Source Method genetically manipulated  
    Entity Name Nup107-160 subcomplex subunit Nup43, p42 
    Chain C
    Description floating chain, unknown sequence 
    Nonstandard Linkage no 
    Nonstandard Monomers no 
    Polymer Type polypeptide(L) 
    Formula Weight 784.0 
    Source Method genetically manipulated  

    Ligands and Prosthetic Groups

    ID Name Chemical Formula Weight Ligand Structure
    UNX  UNKNOWN ATOM OR ION  X   0.00  View 
     
  •   Protein Details   Hide

    UniProtKB Information

    Chain SWS/UNP ID SWS/UNP Accession(s)
    A,B NUP43_HUMAN Q8NFH3     

    Keywords and Names

    Chain(s) RCSB Name UniProtKB Name UniProtKB Keywords

    C: Cellular Location | F: Molecular Function | P: Biological Process
    Chain A,B
    GO ID   Ontology GO Term Definition
    278   Mitotic Cell Cycle  Progression Through the Phases of the Mitotic Cell Cycle the Most Common Eukaryotic Cell Cycle Which Canonically Comprises Four Successive Phases Called G1 S G2 and M and Includes Replication of the Genome and the Subsequent Segregation of Chromosomes Into Daughter Cells. in Some Variant Cell Cycles Nuclear Replication or Nuclear Division May Not Be Followed by Cell Division or G1 and G2 Phases May Be Absent. 
    5975   Carbohydrate Metabolic Process  The Chemical Reactions and Pathways Involving Carbohydrates Any of a Group of Organic Compounds Based of the General Formula Cx(h2o)y. Includes the Formation of Carbohydrate Derivatives by the Addition of a Carbohydrate Residue to Another Molecule. 
    6810   Transport  The Directed Movement of Substances (such As Macromolecules Small Molecules Ions) Into Out of or Within a Cell or Between Cells or Within a Multicellular Organism by Means of Some Agent Such As a Transporter or Pore. 
    7049   Cell Cycle  The Progression of Biochemical and Morphological Phases and Events That Occur in a Cell During Successive Cell Replication or Nuclear Replication Events. Canonically the Cell Cycle Comprises the Replication and Segregation of Genetic Material Followed by the Division of the Cell But in Endocycles or Syncytial Cells Nuclear Replication or Nuclear Division May Not Be Followed by Cell Division. 
    7059   Chromosome Segregation  The Process in Which Genetic Material in the Form of Chromosomes Is Organized Into Specific Structures and Then Physically Separated and Apportioned to Two or More Sets. in Eukaryotes Chromosome Segregation Begins with the Condensation of Chromosomes Includes Chromosome Separation and Ends When Chromosomes Have Completed Movement to the Spindle Poles. 
    7067   Mitotic Nuclear Division  A Cell Cycle Process Comprising the Steps by Which the Nucleus of a Eukaryotic Cell Divides; the Process Involves Condensation of Chromosomal DNA Into a Highly Compacted Form. Canonically Mitosis Produces Two Daughter Nuclei Whose Chromosome Complement Is Identical to That of the Mother Cell. 
    7077   Mitotic Nuclear Envelope Disassembly  The Cell Cycle Process in Which the Controlled Breakdown of the Nuclear Envelope During Mitotic Cell Division Occurs. 
    8645   Hexose Transport  The Directed Movement of Hexose Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. Hexoses Are Any Aldoses with a Chain of Six Carbon Atoms in the Molecule. 
    10827   Regulation of Glucose Transport  Any Process That Modulates the Frequency Rate or Extent of Glucose Transport. Glucose Transport Is the Directed Movement of the Hexose Monosaccharide Glucose Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    15031   Protein Transport  The Directed Movement of Proteins Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    15758   Glucose Transport  The Directed Movement of the Hexose Monosaccharide Glucose Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    16032   Viral Process  A Multi Organism Process in Which a Virus Is a Participant. the Other Participant Is the Host. Includes Infection of a Host Cell Replication of the Viral Genome and Assembly of Progeny Virus Particles. in Some Cases the Viral Genetic Material May Integrate Into the Host Genome and Only Subsequently Under Particular Circumstances 'complete' Its Life Cycle. 
    19221   Cytokine Mediated Signaling Pathway  A Series of Molecular Signals Initiated by the Binding of a Cytokine to a Receptor On the Surface of a Cell and Ending with Regulation of a Downstream Cellular Process E.g. Transcription. 
    44281   Small Molecule Metabolic Process  The Chemical Reactions and Pathways Involving Small Molecules Any Low Molecular Weight Monomeric Non Encoded Molecule. 
    51028   MRNA Transport  The Directed Movement of MRNA Messenger Ribonucleic Acid Into Out of or Within a Cell or Between Cells by Means of Some Agent Such As a Transporter or Pore. 
    51301   Cell Division  The Process Resulting in the Physical Partitioning and Separation of a Cell Into Daughter Cells. 
    55085   Transmembrane Transport  The Process in Which a Solute Is Transported From One Side of a Membrane to the Other. 
    775   Chromosome Centromeric Region  The Region of a Chromosome That Includes the Centromeric DNA and Associated Proteins. in Monocentric Chromosomes This Region Corresponds to a Single Area of the Chromosome Whereas in Holocentric Chromosomes It Is Evenly Distributed Along the Chromosome. 
    776   Kinetochore  A Multisubunit Complex That Is Located At the Centromeric Region of DNA and Provides an Attachment Point For the Spindle Microtubules. 
    777   Condensed Chromosome Kinetochore  A Multisubunit Complex That Is Located At the Centromeric Region of a Condensed Chromosome and Provides an Attachment Point For the Spindle Microtubules. 
    5634   Nucleus  A Membrane Bounded Organelle of Eukaryotic Cells in Which Chromosomes Are Housed and Replicated. in Most Cells the Nucleus Contains All of the Cell's Chromosomes Except the Organellar Chromosomes and Is the Site of RNA Synthesis and Processing. in Some Species or in Specialized Cell Types RNA Metabolism or DNA Replication May Be Absent. 
    5635   Nuclear Envelope  The Double Lipid Bilayer Enclosing the Nucleus and Separating Its Contents From the Rest of the Cytoplasm; Includes the Intermembrane Space a Gap of Width 20 40 Nm (also Called the Perinuclear Space). 
    5643   Nuclear Pore  Any of the Numerous Similar Discrete Openings in the Nuclear Envelope of a Eukaryotic Cell Where the Inner and Outer Nuclear Membranes Are Joined. 
    5694   Chromosome  A Structure Composed of a Very Long Molecule of DNA and Associated Proteins (e.g. Histones) That Carries Hereditary Information. 
    5829   Cytosol  The Part of the Cytoplasm That Does Not Contain Organelles But Which Does Contain Other Particulate Matter Such As Protein Complexes. 
    31080   Nuclear Pore Outer Ring  A Subcomplex of the Nuclear Pore Complex (npc) That Forms the Outer Rings of the Core Scaffold a Lattice Like Structure That Gives the Npc Its Shape and Strength. in S. Cerevisiae the Two Outer Rings Each Contain Multiple Copies of the Following Proteins: Nup133p Nup120p Nup145cp Nup85p Nup84p Seh1p and Sec13p. in Vertebrates the Two Outer Rings Each Contain Multiple Copies of the Following Proteins: Nup133 Nup160 Nup96 Nup75 Nup107 Seh1 Sec13 Nup43 Nup37 and Aladin. Components Are Arranged in 8 Fold Symmetrical 'spokes' Around the Central Transport Channel. a Single 'spoke' Can Be Isolated and Is Sometimes Referred to As the Nup84 Complex (s. Cerevisiae) or the Nup107 160 Complex (vertebrates). 
    5515   Protein Binding  Interacting Selectively and Non Covalently with Any Protein or Protein Complex (a Complex of Two or More Proteins That May Include Other Nonprotein Molecules). 


     
  •   Gene Details   Hide

    Genetic Source

    Chain C
    Common Name Human
    Scientific Name Homo sapiens  
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Plasmid
    Host Plasmid Name pFBOH-LIC


    Chain A,B
    Common Name Human
    Scientific Name Homo sapiens  
    Gene nup43
    Host Common Name Fall Armyworm
    Host Scientific Name Spodoptera frugiperda  
    Host Cell Line Sf9
    Host Vector Type Plasmid
    Host Plasmid Name pFBOH-LIC


    Genome Information

    Chromosome Locus Gene ID Gene Name Symbol
    6 6q25.1 348995     nucleoporin 43kDa NUP43    

    Single Nucleotide Polymorphisms (from LS-SNP database)

    SNP ID LsSnp Link dbSNP Link Chain PDB position Amino acid changes Secondary structure Solvent Accessibility Chromosome Chromosome position Ligand
    rs143503214 LS-SNP   dbSNP   A 31 T - > S Beta Ladder 1% (Buried) 6 150067541
    rs141153109 LS-SNP   dbSNP   A 41 E - > K Bend 39% (Exposed) 6 150067198 UNX
    rs200853061 LS-SNP   dbSNP   A 47 W - > G Beta Ladder 13% (Intermediate) 6 150067180
    rs61748673 LS-SNP   dbSNP   A 65 H - > Y Coil 4% (Buried) 6 150067126
    rs200569726 LS-SNP   dbSNP   A 70 D - > H Beta Ladder 44% (Exposed) 6 150067111
    rs139124876 LS-SNP   dbSNP   A 72 R - > G Beta Ladder 46% (Exposed) 6 150067105 UNX
    rs142854911 LS-SNP   dbSNP   A 124 P - > S Coil 0% (Buried) 6 150063658
    rs76293895 LS-SNP   dbSNP   A 135 T - > P Beta Ladder 11% (Intermediate) 6 150063625
    rs147466189 LS-SNP   dbSNP   A 136 G - > S Beta Ladder 0% (Buried) 6 150063622
    rs142973580 LS-SNP   dbSNP   A 139 C - > Y Beta Ladder 21% (Intermediate) 6 150063612
    rs201107558 LS-SNP   dbSNP   A 147 V - > A Beta Ladder 0% (Buried) 6 150063588
    rs201648123 LS-SNP   dbSNP   A 152 R - > Q Beta Ladder 18% (Intermediate) 6 150063573
    rs200081462 LS-SNP   dbSNP   A 172 S - > N Bend 102% (Exposed) 6 150059902
    rs139397416 LS-SNP   dbSNP   A 188 T - > I Beta Ladder 0% (Buried) 6 150059854
    rs79080640 LS-SNP   dbSNP   A 210 I - > R Beta Ladder 38% (Exposed) 6 150059788
    rs138246789 LS-SNP   dbSNP   A 294 D - > N Coil 0% (Buried) 6 150052782
    rs150329472 LS-SNP   dbSNP   A 295 V - > A Coil 0% (Buried) 6 150052778
    rs200426864 LS-SNP   dbSNP   A 310 T - > A Coil 0% (Buried) 6 150048320
    rs200011392 LS-SNP   dbSNP   A 313 S - > C Coil 0% (Buried) 6 150048310
    rs182898407 LS-SNP   dbSNP   A 333 T - > I Coil 0% (Buried) 6 150048250
    rs144620391 LS-SNP   dbSNP   A 335 P - > A Coil 0% (Buried) 6 150048245
    rs140800369 LS-SNP   dbSNP   A 339 R - > Q Coil 59% (Exposed) 6 150048232
    rs146519216 LS-SNP   dbSNP   A 345 L - > F Coil 23% (Intermediate) 6 150048213
    rs186258846 LS-SNP   dbSNP   A 355 T - > S Beta Ladder 0% (Buried) 6 150048184
    rs112029477 LS-SNP   dbSNP   A 362 C - > R Beta Ladder 0% (Buried) 6 150048164